Cluster: C126.CMAG_3_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: C126.CMAG_3
- CGC Family ID: CGCFAM_01343
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C126_contig_741 | C126_contig_741_1597 | 1538916 | 1539608 | + | 8.A.3.2.3 |
| TC | C126_contig_741 | C126_contig_741_1598 | 1539618 | 1540358 | + | 8.A.3.2.3 |
| TC | C126_contig_741 | C126_contig_741_1599 | 1540415 | 1541782 | + | 9.B.18.1.2 |
| NULL(UNKNOWN) | C126_contig_741 | C126_contig_741_1600 | 1542071 | 1542568 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C126_contig_741 | C126_contig_741_1601 | 1542510 | 1543007 | + | 9.B.18.1.2 |
| pfam | C126_contig_741 | C126_contig_741_1602 | 1543016 | 1543465 | + | Alg14 |
| CAZyme | C126_contig_741 | C126_contig_741_1603 | 1543465 | 1543980 | + | GT1 |
| CAZyme | C126_contig_741 | C126_contig_741_1604 | 1543970 | 1544866 | + | GT2 |
| CAZyme | C126_contig_741 | C126_contig_741_1605 | 1545151 | 1546170 | + | GT2 |
| NULL(UNKNOWN) | C126_contig_741 | C126_contig_741_1606 | 1546200 | 1547342 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C126_contig_741 | C126_contig_741_1607 | 1547357 | 1548166 | + | GT32 |
| CAZyme | C126_contig_741 | C126_contig_741_1608 | 1548430 | 1548951 | + | GT2 |
Gene ID: C126_contig_741_1597
Type: TC
Location: 1538916 - 1539608 (+)
Type: TC
Location: 1538916 - 1539608 (+)
Gene ID: C126_contig_741_1598
Type: TC
Location: 1539618 - 1540358 (+)
Type: TC
Location: 1539618 - 1540358 (+)
Gene ID: C126_contig_741_1599
Type: TC
Location: 1540415 - 1541782 (+)
Type: TC
Location: 1540415 - 1541782 (+)
Gene ID: C126_contig_741_1600
Type:
Location: 1542071 - 1542568 (+)
Type:
Location: 1542071 - 1542568 (+)
Gene ID: C126_contig_741_1601
Type: TC
Location: 1542510 - 1543007 (+)
Type: TC
Location: 1542510 - 1543007 (+)
Gene ID: C126_contig_741_1602
Type: pfam
Location: 1543016 - 1543465 (+)
Type: pfam
Location: 1543016 - 1543465 (+)
Gene ID: C126_contig_741_1603
Type: CAZyme
Location: 1543465 - 1543980 (+)
Type: CAZyme
Location: 1543465 - 1543980 (+)
Gene ID: C126_contig_741_1604
Type: CAZyme
Location: 1543970 - 1544866 (+)
Type: CAZyme
Location: 1543970 - 1544866 (+)
Gene ID: C126_contig_741_1605
Type: CAZyme
Location: 1545151 - 1546170 (+)
Type: CAZyme
Location: 1545151 - 1546170 (+)
Gene ID: C126_contig_741_1606
Type:
Location: 1546200 - 1547342 (+)
Type:
Location: 1546200 - 1547342 (+)
Gene ID: C126_contig_741_1607
Type: CAZyme
Location: 1547357 - 1548166 (+)
Type: CAZyme
Location: 1547357 - 1548166 (+)
Gene ID: C126_contig_741_1608
Type: CAZyme
Location: 1548430 - 1548951 (+)
Type: CAZyme
Location: 1548430 - 1548951 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus thermophilus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.