Cluster: C126.CMAG_3_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C126.CMAG_3
- CGC Family ID: CGCFAM_00530
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C126_contig_741 | C126_contig_741_1518 | 1464401 | 1465402 | + | 3.A.1.34.1 |
| TC | C126_contig_741 | C126_contig_741_1519 | 1465412 | 1466281 | + | 3.A.1.34.1 |
| TC | C126_contig_741 | C126_contig_741_1520 | 1466278 | 1467036 | + | 3.A.1.34.1 |
| pfam | C126_contig_741 | C126_contig_741_1521 | 1467218 | 1468879 | + | Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP |
| CAZyme | C126_contig_741 | C126_contig_741_1522 | 1469004 | 1469786 | + | CE1 |
Gene ID: C126_contig_741_1518
Type: TC
Location: 1464401 - 1465402 (+)
Type: TC
Location: 1464401 - 1465402 (+)
Gene ID: C126_contig_741_1519
Type: TC
Location: 1465412 - 1466281 (+)
Type: TC
Location: 1465412 - 1466281 (+)
Gene ID: C126_contig_741_1520
Type: TC
Location: 1466278 - 1467036 (+)
Type: TC
Location: 1466278 - 1467036 (+)
Gene ID: C126_contig_741_1521
Type: pfam
Location: 1467218 - 1468879 (+)
Type: pfam
Location: 1467218 - 1468879 (+)
Gene ID: C126_contig_741_1522
Type: CAZyme
Location: 1469004 - 1469786 (+)
Type: CAZyme
Location: 1469004 - 1469786 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus thermophilus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C126_contig_741_1520 | vegan > omnivore | 2.51706 | 0.00958 |
| C126_contig_741_1520 | vegetarian > omnivore | 2.64618 | 0.00627 |
| C126_contig_741_1521 | vegan > omnivore | 1.02006 | 0.02918 |
| C126_contig_741_1521 | vegetarian > omnivore | 1.12252 | 0.00627 |