Cluster: C124.bin_14_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C124.bin_14
- CGC Family ID: CGCFAM_01401
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C124_contig_1569 | C124_contig_1569_233 | 262780 | 264093 | + | GH10 |
| pfam | C124_contig_1569 | C124_contig_1569_234 | 264214 | 264582 | - | Flg_new |
| TC | C124_contig_1569 | C124_contig_1569_235 | 264702 | 265787 | - | 3.A.1.2.3 |
| TC | C124_contig_1569 | C124_contig_1569_236 | 265805 | 267343 | - | 3.A.1.2.3 |
| TC | C124_contig_1569 | C124_contig_1569_237 | 267417 | 268484 | - | 3.A.1.2.3 |
| TF | C124_contig_1569 | C124_contig_1569_238 | 268792 | 270378 | + | HTH_AraC |
| TC | C124_contig_1569 | C124_contig_1569_239 | 270407 | 272134 | + | 8.A.59.2.1 |
Gene ID: C124_contig_1569_233
Type: CAZyme
Location: 262780 - 264093 (+)
Type: CAZyme
Location: 262780 - 264093 (+)
Gene ID: C124_contig_1569_234
Type: pfam
Location: 264214 - 264582 (-)
Type: pfam
Location: 264214 - 264582 (-)
Gene ID: C124_contig_1569_235
Type: TC
Location: 264702 - 265787 (-)
Type: TC
Location: 264702 - 265787 (-)
Gene ID: C124_contig_1569_236
Type: TC
Location: 265805 - 267343 (-)
Type: TC
Location: 265805 - 267343 (-)
Gene ID: C124_contig_1569_237
Type: TC
Location: 267417 - 268484 (-)
Type: TC
Location: 267417 - 268484 (-)
Gene ID: C124_contig_1569_238
Type: TF
Location: 268792 - 270378 (+)
Type: TF
Location: 268792 - 270378 (+)
Gene ID: C124_contig_1569_239
Type: TC
Location: 270407 - 272134 (+)
Type: TC
Location: 270407 - 272134 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
Flemingibacterium
Species
Flemingibacterium sp900546315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C124_contig_1569_235 | vegetarian > vegan | 1.36903 | 0.00114 |
| C124_contig_1569_237 | vegetarian > vegan | 1.91510 | 0.00114 |
| C124_contig_1569_238 | vegetarian > omnivore | 1.03498 | 0.00806 |
| C124_contig_1569_238 | vegetarian > vegan | 1.12714 | 0.00114 |
| C124_contig_1569_239 | vegetarian > vegan | 1.20425 | 0.00114 |