Cluster: C111.CMAG_1_CGC9
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_07890
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_381 | 441408 | 442988 | + | 3.A.2.1.7 |
| TC | C111_contig_23 | C111_contig_23_382 | 442992 | 443867 | + | 3.A.2.1.7 |
| TC | C111_contig_23 | C111_contig_23_383 | 444295 | 445779 | - | 1.B.17.3.5 |
| TC | C111_contig_23 | C111_contig_23_384 | 445816 | 448986 | - | 2.A.6.2.22 |
| TC | C111_contig_23 | C111_contig_23_385 | 449010 | 450215 | - | 2.A.6.2.45 |
| CAZyme | C111_contig_23 | C111_contig_23_386 | 450527 | 453646 | - | GH2 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_387 | 453941 | 454042 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C111_contig_23 | C111_contig_23_388 | 454423 | 457302 | + | GH106 |
| CAZyme | C111_contig_23 | C111_contig_23_389 | 457416 | 458891 | + | GH28 |
| CAZyme | C111_contig_23 | C111_contig_23_390 | 458898 | 460391 | + | GH28 |
| CAZyme | C111_contig_23 | C111_contig_23_391 | 460432 | 461190 | + | GH28 |
| CAZyme | C111_contig_23 | C111_contig_23_392 | 461510 | 464419 | + | GH106 |
| CAZyme | C111_contig_23 | C111_contig_23_393 | 464625 | 467540 | + | GH106 |
| CAZyme | C111_contig_23 | C111_contig_23_394 | 467684 | 469171 | + | GH28 |
| CAZyme | C111_contig_23 | C111_contig_23_395 | 469197 | 472085 | + | GH106 |
| CAZyme | C111_contig_23 | C111_contig_23_396 | 472281 | 473753 | + | GH28 |
| TC | C111_contig_23 | C111_contig_23_397 | 474067 | 476028 | + | 9.B.14.3.1 |
Gene ID: C111_contig_23_381
Type: TC
Location: 441408 - 442988 (+)
Type: TC
Location: 441408 - 442988 (+)
Gene ID: C111_contig_23_382
Type: TC
Location: 442992 - 443867 (+)
Type: TC
Location: 442992 - 443867 (+)
Gene ID: C111_contig_23_383
Type: TC
Location: 444295 - 445779 (-)
Type: TC
Location: 444295 - 445779 (-)
Gene ID: C111_contig_23_384
Type: TC
Location: 445816 - 448986 (-)
Type: TC
Location: 445816 - 448986 (-)
Gene ID: C111_contig_23_385
Type: TC
Location: 449010 - 450215 (-)
Type: TC
Location: 449010 - 450215 (-)
Gene ID: C111_contig_23_386
Type: CAZyme
Location: 450527 - 453646 (-)
Type: CAZyme
Location: 450527 - 453646 (-)
Gene ID: C111_contig_23_387
Type:
Location: 453941 - 454042 (+)
Type:
Location: 453941 - 454042 (+)
Gene ID: C111_contig_23_388
Type: CAZyme
Location: 454423 - 457302 (+)
Type: CAZyme
Location: 454423 - 457302 (+)
Gene ID: C111_contig_23_389
Type: CAZyme
Location: 457416 - 458891 (+)
Type: CAZyme
Location: 457416 - 458891 (+)
Gene ID: C111_contig_23_390
Type: CAZyme
Location: 458898 - 460391 (+)
Type: CAZyme
Location: 458898 - 460391 (+)
Gene ID: C111_contig_23_391
Type: CAZyme
Location: 460432 - 461190 (+)
Type: CAZyme
Location: 460432 - 461190 (+)
Gene ID: C111_contig_23_392
Type: CAZyme
Location: 461510 - 464419 (+)
Type: CAZyme
Location: 461510 - 464419 (+)
Gene ID: C111_contig_23_393
Type: CAZyme
Location: 464625 - 467540 (+)
Type: CAZyme
Location: 464625 - 467540 (+)
Gene ID: C111_contig_23_394
Type: CAZyme
Location: 467684 - 469171 (+)
Type: CAZyme
Location: 467684 - 469171 (+)
Gene ID: C111_contig_23_395
Type: CAZyme
Location: 469197 - 472085 (+)
Type: CAZyme
Location: 469197 - 472085 (+)
Gene ID: C111_contig_23_396
Type: CAZyme
Location: 472281 - 473753 (+)
Type: CAZyme
Location: 472281 - 473753 (+)
Gene ID: C111_contig_23_397
Type: TC
Location: 474067 - 476028 (+)
Type: TC
Location: 474067 - 476028 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_385 | vegan > omnivore | 1.34246 | 0.03702 |
| C111_contig_23_385 | vegetarian > omnivore | 1.55874 | 0.00450 |
| C111_contig_23_386 | vegetarian > omnivore | 1.36659 | 0.00450 |
| C111_contig_23_387 | vegetarian > vegan | 1.06960 | 0.02154 |
| C111_contig_23_389 | vegetarian > omnivore | 1.01356 | 0.00450 |
| C111_contig_23_390 | vegetarian > omnivore | 1.11044 | 0.00450 |
| C111_contig_23_391 | vegetarian > omnivore | 1.60818 | 0.00450 |
| C111_contig_23_391 | vegetarian > vegan | 1.02559 | 0.02154 |
| C111_contig_23_393 | vegan > omnivore | 1.00097 | 0.03702 |
| C111_contig_23_393 | vegetarian > omnivore | 1.41582 | 0.00450 |
| C111_contig_23_395 | vegetarian > omnivore | 1.21598 | 0.00450 |
| C111_contig_23_396 | vegetarian > omnivore | 1.38068 | 0.00450 |