Cluster: C111.CMAG_1_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_04510
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_352 | 404226 | 406856 | - | CBM67 | GH78 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_353 | 407381 | 408433 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C111_contig_23 | C111_contig_23_354 | 408825 | 410294 | + | 1.I.1.1.3 |
| CAZyme | C111_contig_23 | C111_contig_23_355 | 410656 | 413112 | + | GH3 |
| TC | C111_contig_23 | C111_contig_23_356 | 413253 | 413915 | + | 9.B.20.1.4 |
Gene ID: C111_contig_23_352
Type: CAZyme
Location: 404226 - 406856 (-)
Type: CAZyme
Location: 404226 - 406856 (-)
Gene ID: C111_contig_23_353
Type:
Location: 407381 - 408433 (-)
Type:
Location: 407381 - 408433 (-)
Gene ID: C111_contig_23_354
Type: TC
Location: 408825 - 410294 (+)
Type: TC
Location: 408825 - 410294 (+)
Gene ID: C111_contig_23_355
Type: CAZyme
Location: 410656 - 413112 (+)
Type: CAZyme
Location: 410656 - 413112 (+)
Gene ID: C111_contig_23_356
Type: TC
Location: 413253 - 413915 (+)
Type: TC
Location: 413253 - 413915 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_352 | vegetarian > omnivore | 1.58535 | 0.00450 |
| C111_contig_23_353 | vegetarian > omnivore | 1.63064 | 0.00450 |