Cluster: C111.CMAG_1_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_00013
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_300 | 336469 | 337590 | - | GT28 |
| pfam | C111_contig_23 | C111_contig_23_301 | 337625 | 337975 | - | DUF3795 |
| TC | C111_contig_23 | C111_contig_23_302 | 338135 | 339436 | - | 2.A.103.1.3 |
| pfam | C111_contig_23 | C111_contig_23_303 | 339887 | 341245 | - | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | C111_contig_23 | C111_contig_23_304 | 341248 | 342495 | - | 9.B.146.1.6 |
| pfam | C111_contig_23 | C111_contig_23_305 | 342501 | 344180 | - | PQQ_2 |
| pfam | C111_contig_23 | C111_contig_23_306 | 344262 | 345710 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | C111_contig_23 | C111_contig_23_307 | 345819 | 348134 | - | 2.A.37.1.12 |
Gene ID: C111_contig_23_300
Type: CAZyme
Location: 336469 - 337590 (-)
Type: CAZyme
Location: 336469 - 337590 (-)
Gene ID: C111_contig_23_301
Type: pfam
Location: 337625 - 337975 (-)
Type: pfam
Location: 337625 - 337975 (-)
Gene ID: C111_contig_23_302
Type: TC
Location: 338135 - 339436 (-)
Type: TC
Location: 338135 - 339436 (-)
Gene ID: C111_contig_23_303
Type: pfam
Location: 339887 - 341245 (-)
Type: pfam
Location: 339887 - 341245 (-)
Gene ID: C111_contig_23_304
Type: TC
Location: 341248 - 342495 (-)
Type: TC
Location: 341248 - 342495 (-)
Gene ID: C111_contig_23_305
Type: pfam
Location: 342501 - 344180 (-)
Type: pfam
Location: 342501 - 344180 (-)
Gene ID: C111_contig_23_306
Type: pfam
Location: 344262 - 345710 (-)
Type: pfam
Location: 344262 - 345710 (-)
Gene ID: C111_contig_23_307
Type: TC
Location: 345819 - 348134 (-)
Type: TC
Location: 345819 - 348134 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_301 | vegetarian > omnivore | 1.09994 | 0.00450 |
| C111_contig_23_305 | vegetarian > omnivore | 1.24653 | 0.00450 |
| C111_contig_23_306 | vegetarian > vegan | 1.20232 | 0.02154 |
| C111_contig_23_307 | vegetarian > omnivore | 1.40136 | 0.00450 |