Cluster: C111.CMAG_1_CGC37
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: C111.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_2348 | 2840278 | 2841282 | - | GH43_17 |
| CAZyme | C111_contig_23 | C111_contig_23_2349 | 2841614 | 2844139 | - | GH36 |
| CAZyme | C111_contig_23 | C111_contig_23_2350 | 2844457 | 2845617 | - | GT4 |
| pfam | C111_contig_23 | C111_contig_23_2351 | 2845663 | 2846082 | - | Glycos_transf_1 | Glyco_trans_1_2 | Glyco_trans_1_4 |
| TC | C111_contig_23 | C111_contig_23_2352 | 2846255 | 2847937 | - | 2.A.81.1.2 |
| TC | C111_contig_23 | C111_contig_23_2353 | 2847998 | 2849536 | - | 3.B.1.1.2 |
Gene ID: C111_contig_23_2348
Type: CAZyme
Location: 2840278 - 2841282 (-)
Type: CAZyme
Location: 2840278 - 2841282 (-)
Gene ID: C111_contig_23_2349
Type: CAZyme
Location: 2841614 - 2844139 (-)
Type: CAZyme
Location: 2841614 - 2844139 (-)
Gene ID: C111_contig_23_2350
Type: CAZyme
Location: 2844457 - 2845617 (-)
Type: CAZyme
Location: 2844457 - 2845617 (-)
Gene ID: C111_contig_23_2351
Type: pfam
Location: 2845663 - 2846082 (-)
Type: pfam
Location: 2845663 - 2846082 (-)
Gene ID: C111_contig_23_2352
Type: TC
Location: 2846255 - 2847937 (-)
Type: TC
Location: 2846255 - 2847937 (-)
Gene ID: C111_contig_23_2353
Type: TC
Location: 2847998 - 2849536 (-)
Type: TC
Location: 2847998 - 2849536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_2349 | vegetarian > omnivore | 1.71548 | 0.00450 |
| C111_contig_23_2350 | vegan > omnivore | 1.02296 | 0.03702 |
| C111_contig_23_2350 | vegetarian > omnivore | 1.46604 | 0.00450 |
| C111_contig_23_2351 | vegetarian > omnivore | 2.02341 | 0.00450 |
| C111_contig_23_2351 | vegetarian > vegan | 1.04154 | 0.02154 |