Cluster: C111.CMAG_1_CGC35
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_07888
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_2141 | 2598501 | 2599799 | + | GH171 |
| CAZyme | C111_contig_23 | C111_contig_23_2142 | 2599789 | 2602332 | + | GH20 |
| peptidase | C111_contig_23 | C111_contig_23_2143 | 2602329 | 2603624 | + | S12.UPW |
| TC | C111_contig_23 | C111_contig_23_2144 | 2603812 | 2605611 | - | 3.A.6.1.1 |
Gene ID: C111_contig_23_2141
Type: CAZyme
Location: 2598501 - 2599799 (+)
Type: CAZyme
Location: 2598501 - 2599799 (+)
Gene ID: C111_contig_23_2142
Type: CAZyme
Location: 2599789 - 2602332 (+)
Type: CAZyme
Location: 2599789 - 2602332 (+)
Gene ID: C111_contig_23_2143
Type: peptidase
Location: 2602329 - 2603624 (+)
Type: peptidase
Location: 2602329 - 2603624 (+)
Gene ID: C111_contig_23_2144
Type: TC
Location: 2603812 - 2605611 (-)
Type: TC
Location: 2603812 - 2605611 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_2141 | vegetarian > omnivore | 1.24638 | 0.00450 |
| C111_contig_23_2143 | vegetarian > omnivore | 1.45291 | 0.00450 |