Cluster: C111.CMAG_1_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_05186
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_1799 | 2201897 | 2203768 | - | GH127 |
| pfam | C111_contig_23 | C111_contig_23_1800 | 2203833 | 2204648 | - | Pantoate_transf | PEP_mutase |
| pfam | C111_contig_23 | C111_contig_23_1801 | 2204800 | 2205333 | - | SpoU_methylase |
| TC | C111_contig_23 | C111_contig_23_1802 | 2205459 | 2207666 | + | 3.A.10.1.10 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_1803 | 2207827 | 2208696 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C111_contig_23 | C111_contig_23_1804 | 2208708 | 2210309 | - | MFS_1 |
| TC | C111_contig_23 | C111_contig_23_1805 | 2210317 | 2211300 | - | 8.A.1.1.1 |
Gene ID: C111_contig_23_1799
Type: CAZyme
Location: 2201897 - 2203768 (-)
Type: CAZyme
Location: 2201897 - 2203768 (-)
Gene ID: C111_contig_23_1800
Type: pfam
Location: 2203833 - 2204648 (-)
Type: pfam
Location: 2203833 - 2204648 (-)
Gene ID: C111_contig_23_1801
Type: pfam
Location: 2204800 - 2205333 (-)
Type: pfam
Location: 2204800 - 2205333 (-)
Gene ID: C111_contig_23_1802
Type: TC
Location: 2205459 - 2207666 (+)
Type: TC
Location: 2205459 - 2207666 (+)
Gene ID: C111_contig_23_1803
Type:
Location: 2207827 - 2208696 (+)
Type:
Location: 2207827 - 2208696 (+)
Gene ID: C111_contig_23_1804
Type: pfam
Location: 2208708 - 2210309 (-)
Type: pfam
Location: 2208708 - 2210309 (-)
Gene ID: C111_contig_23_1805
Type: TC
Location: 2210317 - 2211300 (-)
Type: TC
Location: 2210317 - 2211300 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1799 | vegetarian > omnivore | 1.10388 | 0.00450 |
| C111_contig_23_1801 | vegan > omnivore | 1.36301 | 0.03702 |
| C111_contig_23_1801 | vegetarian > omnivore | 1.11902 | 0.00450 |
| C111_contig_23_1804 | vegetarian > omnivore | 1.31688 | 0.00450 |