Cluster: C111.CMAG_1_CGC32
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: C111.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_1710 | 2080451 | 2083249 | + | 1.B.42.1.8 |
| peptidase | C111_contig_23 | C111_contig_23_1711 | 2083256 | 2085469 | + | M03.UPA |
| pfam | C111_contig_23 | C111_contig_23_1712 | 2085505 | 2086416 | + | NlpE_C |
| CAZyme | C111_contig_23 | C111_contig_23_1713 | 2086994 | 2088334 | - | GH109 |
| CAZyme | C111_contig_23 | C111_contig_23_1714 | 2088377 | 2090494 | - | GH141 |
| CAZyme | C111_contig_23 | C111_contig_23_1715 | 2090822 | 2093260 | - | PL8 |
| TC | C111_contig_23 | C111_contig_23_1716 | 2093418 | 2094374 | + | 8.A.5.1.5 |
| pfam | C111_contig_23 | C111_contig_23_1717 | 2094530 | 2095699 | + | URO-D |
| TC | C111_contig_23 | C111_contig_23_1718 | 2095724 | 2097136 | + | 2.A.1.14.25 |
Gene ID: C111_contig_23_1710
Type: TC
Location: 2080451 - 2083249 (+)
Type: TC
Location: 2080451 - 2083249 (+)
Gene ID: C111_contig_23_1711
Type: peptidase
Location: 2083256 - 2085469 (+)
Type: peptidase
Location: 2083256 - 2085469 (+)
Gene ID: C111_contig_23_1712
Type: pfam
Location: 2085505 - 2086416 (+)
Type: pfam
Location: 2085505 - 2086416 (+)
Gene ID: C111_contig_23_1713
Type: CAZyme
Location: 2086994 - 2088334 (-)
Type: CAZyme
Location: 2086994 - 2088334 (-)
Gene ID: C111_contig_23_1714
Type: CAZyme
Location: 2088377 - 2090494 (-)
Type: CAZyme
Location: 2088377 - 2090494 (-)
Gene ID: C111_contig_23_1715
Type: CAZyme
Location: 2090822 - 2093260 (-)
Type: CAZyme
Location: 2090822 - 2093260 (-)
Gene ID: C111_contig_23_1716
Type: TC
Location: 2093418 - 2094374 (+)
Type: TC
Location: 2093418 - 2094374 (+)
Gene ID: C111_contig_23_1717
Type: pfam
Location: 2094530 - 2095699 (+)
Type: pfam
Location: 2094530 - 2095699 (+)
Gene ID: C111_contig_23_1718
Type: TC
Location: 2095724 - 2097136 (+)
Type: TC
Location: 2095724 - 2097136 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1710 | vegan > omnivore | 1.10555 | 0.03702 |
| C111_contig_23_1710 | vegetarian > omnivore | 1.18423 | 0.00450 |
| C111_contig_23_1712 | vegetarian > omnivore | 1.18093 | 0.00450 |
| C111_contig_23_1713 | vegetarian > omnivore | 1.36065 | 0.00450 |
| C111_contig_23_1714 | vegetarian > omnivore | 1.52833 | 0.00450 |
| C111_contig_23_1715 | vegetarian > omnivore | 1.47037 | 0.00450 |
| C111_contig_23_1716 | vegan > omnivore | 1.44587 | 0.03702 |
| C111_contig_23_1716 | vegetarian > omnivore | 2.34719 | 0.00450 |
| C111_contig_23_1717 | vegetarian > omnivore | 1.36020 | 0.00450 |
| C111_contig_23_1718 | vegetarian > omnivore | 1.10388 | 0.00450 |