Cluster: C111.CMAG_1_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_02706
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_1639 | 1994311 | 1995612 | + | 2.A.13.1.3 |
| pfam | C111_contig_23 | C111_contig_23_1640 | 1995783 | 1996610 | - | Ion_trans | Ion_trans_2 |
| TC | C111_contig_23 | C111_contig_23_1641 | 1996770 | 1999070 | - | 1.B.14.10.1 |
| CAZyme | C111_contig_23 | C111_contig_23_1642 | 1999193 | 1999873 | + | GH25 |
| TC | C111_contig_23 | C111_contig_23_1643 | 1999873 | 2001456 | + | 3.D.10.1.6 |
Gene ID: C111_contig_23_1639
Type: TC
Location: 1994311 - 1995612 (+)
Type: TC
Location: 1994311 - 1995612 (+)
Gene ID: C111_contig_23_1640
Type: pfam
Location: 1995783 - 1996610 (-)
Type: pfam
Location: 1995783 - 1996610 (-)
Gene ID: C111_contig_23_1641
Type: TC
Location: 1996770 - 1999070 (-)
Type: TC
Location: 1996770 - 1999070 (-)
Gene ID: C111_contig_23_1642
Type: CAZyme
Location: 1999193 - 1999873 (+)
Type: CAZyme
Location: 1999193 - 1999873 (+)
Gene ID: C111_contig_23_1643
Type: TC
Location: 1999873 - 2001456 (+)
Type: TC
Location: 1999873 - 2001456 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1641 | vegetarian > omnivore | 1.13153 | 0.00450 |