Cluster: C111.CMAG_1_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_07887
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_1592 | 1938453 | 1940384 | - | 2.A.16.2.2 |
| STP | C111_contig_23 | C111_contig_23_1593 | 1940407 | 1941030 | - | Nitroreductase |
| pfam | C111_contig_23 | C111_contig_23_1594 | 1941257 | 1942225 | + | DUF3089 |
| CAZyme | C111_contig_23 | C111_contig_23_1595 | 1942369 | 1944726 | + | GH95 |
| TC | C111_contig_23 | C111_contig_23_1596 | 1944733 | 1945362 | - | 9.B.31.1.2 |
| TC | C111_contig_23 | C111_contig_23_1597 | 1945505 | 1946422 | + | 2.A.115.1.2 |
Gene ID: C111_contig_23_1592
Type: TC
Location: 1938453 - 1940384 (-)
Type: TC
Location: 1938453 - 1940384 (-)
Gene ID: C111_contig_23_1593
Type: STP
Location: 1940407 - 1941030 (-)
Type: STP
Location: 1940407 - 1941030 (-)
Gene ID: C111_contig_23_1594
Type: pfam
Location: 1941257 - 1942225 (+)
Type: pfam
Location: 1941257 - 1942225 (+)
Gene ID: C111_contig_23_1595
Type: CAZyme
Location: 1942369 - 1944726 (+)
Type: CAZyme
Location: 1942369 - 1944726 (+)
Gene ID: C111_contig_23_1596
Type: TC
Location: 1944733 - 1945362 (-)
Type: TC
Location: 1944733 - 1945362 (-)
Gene ID: C111_contig_23_1597
Type: TC
Location: 1945505 - 1946422 (+)
Type: TC
Location: 1945505 - 1946422 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1594 | vegetarian > omnivore | 1.30083 | 0.00450 |
| C111_contig_23_1595 | vegetarian > omnivore | 1.03913 | 0.00450 |