Cluster: C111.CMAG_1_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_07886
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_134 | 127143 | 129317 | + | GH78 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_135 | 129529 | 130737 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C111_contig_23 | C111_contig_23_136 | 130837 | 132162 | - | OEP | OEP |
| TC | C111_contig_23 | C111_contig_23_137 | 132159 | 135212 | - | 2.A.6.2.38 |
| TC | C111_contig_23 | C111_contig_23_138 | 135410 | 136432 | - | 2.A.6.2.18 |
Gene ID: C111_contig_23_134
Type: CAZyme
Location: 127143 - 129317 (+)
Type: CAZyme
Location: 127143 - 129317 (+)
Gene ID: C111_contig_23_135
Type:
Location: 129529 - 130737 (+)
Type:
Location: 129529 - 130737 (+)
Gene ID: C111_contig_23_136
Type: pfam
Location: 130837 - 132162 (-)
Type: pfam
Location: 130837 - 132162 (-)
Gene ID: C111_contig_23_137
Type: TC
Location: 132159 - 135212 (-)
Type: TC
Location: 132159 - 135212 (-)
Gene ID: C111_contig_23_138
Type: TC
Location: 135410 - 136432 (-)
Type: TC
Location: 135410 - 136432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_134 | vegetarian > omnivore | 1.34611 | 0.00450 |
| C111_contig_23_136 | vegan > omnivore | 1.20223 | 0.03702 |
| C111_contig_23_136 | vegetarian > omnivore | 1.75079 | 0.00450 |
| C111_contig_23_138 | vegetarian > omnivore | 1.08727 | 0.00450 |