Cluster: C111.CMAG_1_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_02153
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_1444 | 1781669 | 1784890 | + | GH2 |
| CAZyme | C111_contig_23 | C111_contig_23_1445 | 1784922 | 1787726 | + | CBM67 | GH78 |
| pfam | C111_contig_23 | C111_contig_23_1446 | 1787871 | 1788119 | + | TatA_B_E |
| TC | C111_contig_23 | C111_contig_23_1447 | 1788148 | 1789002 | + | 2.A.64.3.2 |
Gene ID: C111_contig_23_1444
Type: CAZyme
Location: 1781669 - 1784890 (+)
Type: CAZyme
Location: 1781669 - 1784890 (+)
Gene ID: C111_contig_23_1445
Type: CAZyme
Location: 1784922 - 1787726 (+)
Type: CAZyme
Location: 1784922 - 1787726 (+)
Gene ID: C111_contig_23_1446
Type: pfam
Location: 1787871 - 1788119 (+)
Type: pfam
Location: 1787871 - 1788119 (+)
Gene ID: C111_contig_23_1447
Type: TC
Location: 1788148 - 1789002 (+)
Type: TC
Location: 1788148 - 1789002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1445 | vegetarian > omnivore | 1.37865 | 0.00450 |
| C111_contig_23_1446 | vegan > omnivore | 1.36040 | 0.03702 |