Cluster: C111.CMAG_1_CGC28
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_01911
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_1385 | 1701988 | 1703373 | + | 2.A.1.1.3 |
| peptidase | C111_contig_23 | C111_contig_23_1386 | 1703517 | 1704278 | - | M95.UPW |
| CAZyme | C111_contig_23 | C111_contig_23_1387 | 1704381 | 1706585 | - | GH3 |
Gene ID: C111_contig_23_1385
Type: TC
Location: 1701988 - 1703373 (+)
Type: TC
Location: 1701988 - 1703373 (+)
Gene ID: C111_contig_23_1386
Type: peptidase
Location: 1703517 - 1704278 (-)
Type: peptidase
Location: 1703517 - 1704278 (-)
Gene ID: C111_contig_23_1387
Type: CAZyme
Location: 1704381 - 1706585 (-)
Type: CAZyme
Location: 1704381 - 1706585 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1385 | vegetarian > omnivore | 1.57562 | 0.00450 |
| C111_contig_23_1385 | vegetarian > vegan | 1.03698 | 0.02154 |
| C111_contig_23_1386 | vegetarian > omnivore | 2.11968 | 0.00450 |
| C111_contig_23_1386 | vegetarian > vegan | 1.18230 | 0.02154 |