Cluster: C111.CMAG_1_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_01905
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_1309 | 1604728 | 1607781 | + | 3.A.12.1.1 |
| pfam | C111_contig_23 | C111_contig_23_1310 | 1607793 | 1608443 | + | LolA_2 |
| pfam | C111_contig_23 | C111_contig_23_1311 | 1608621 | 1609079 | - | DUF4293 |
| CAZyme | C111_contig_23 | C111_contig_23_1312 | 1609116 | 1610228 | - | GT2 |
Gene ID: C111_contig_23_1309
Type: TC
Location: 1604728 - 1607781 (+)
Type: TC
Location: 1604728 - 1607781 (+)
Gene ID: C111_contig_23_1310
Type: pfam
Location: 1607793 - 1608443 (+)
Type: pfam
Location: 1607793 - 1608443 (+)
Gene ID: C111_contig_23_1311
Type: pfam
Location: 1608621 - 1609079 (-)
Type: pfam
Location: 1608621 - 1609079 (-)
Gene ID: C111_contig_23_1312
Type: CAZyme
Location: 1609116 - 1610228 (-)
Type: CAZyme
Location: 1609116 - 1610228 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1310 | vegetarian > omnivore | 1.53736 | 0.00450 |
| C111_contig_23_1310 | vegetarian > vegan | 1.15758 | 0.02154 |
| C111_contig_23_1311 | vegetarian > omnivore | 1.74614 | 0.00450 |
| C111_contig_23_1311 | vegetarian > vegan | 1.14771 | 0.02154 |