Cluster: C111.CMAG_1_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_1141 | 1401174 | 1404548 | - | GH106 |
| STP | C111_contig_23 | C111_contig_23_1142 | 1404769 | 1405704 | + | HATPase_c |
| TF | C111_contig_23 | C111_contig_23_1143 | 1405760 | 1406392 | + | GerE |
| TC | C111_contig_23 | C111_contig_23_1144 | 1406531 | 1408135 | - | 1.B.9.4.3 |
Gene ID: C111_contig_23_1141
Type: CAZyme
Location: 1401174 - 1404548 (-)
Type: CAZyme
Location: 1401174 - 1404548 (-)
Gene ID: C111_contig_23_1142
Type: STP
Location: 1404769 - 1405704 (+)
Type: STP
Location: 1404769 - 1405704 (+)
Gene ID: C111_contig_23_1143
Type: TF
Location: 1405760 - 1406392 (+)
Type: TF
Location: 1405760 - 1406392 (+)
Gene ID: C111_contig_23_1144
Type: TC
Location: 1406531 - 1408135 (-)
Type: TC
Location: 1406531 - 1408135 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1141 | vegetarian > omnivore | 1.34238 | 0.00450 |
| C111_contig_23_1142 | vegetarian > omnivore | 1.15781 | 0.00450 |
| C111_contig_23_1144 | vegan > omnivore | 1.17731 | 0.03702 |
| C111_contig_23_1144 | vegetarian > omnivore | 1.15061 | 0.00450 |