Cluster: C111.CMAG_1_CGC22
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: C111.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_1112 | 1367767 | 1369053 | + | GH177 |
| TF | C111_contig_23 | C111_contig_23_1113 | 1369061 | 1370239 | + | HTH_AraC | HTH_AraC |
| TC | C111_contig_23 | C111_contig_23_1114 | 1370358 | 1371068 | + | 1.A.30.3.2 |
| pfam | C111_contig_23 | C111_contig_23_1115 | 1371073 | 1371492 | + | ExbD |
| CAZyme | C111_contig_23 | C111_contig_23_1116 | 1371810 | 1373102 | + | CE7 |
| CAZyme | C111_contig_23 | C111_contig_23_1117 | 1373344 | 1375572 | - | GH78 |
| peptidase | C111_contig_23 | C111_contig_23_1118 | 1375707 | 1376606 | - | S09.UPW |
| CAZyme | C111_contig_23 | C111_contig_23_1119 | 1376753 | 1378954 | - | CBM67 | GH78 |
Gene ID: C111_contig_23_1112
Type: CAZyme
Location: 1367767 - 1369053 (+)
Type: CAZyme
Location: 1367767 - 1369053 (+)
Gene ID: C111_contig_23_1113
Type: TF
Location: 1369061 - 1370239 (+)
Type: TF
Location: 1369061 - 1370239 (+)
Gene ID: C111_contig_23_1114
Type: TC
Location: 1370358 - 1371068 (+)
Type: TC
Location: 1370358 - 1371068 (+)
Gene ID: C111_contig_23_1115
Type: pfam
Location: 1371073 - 1371492 (+)
Type: pfam
Location: 1371073 - 1371492 (+)
Gene ID: C111_contig_23_1116
Type: CAZyme
Location: 1371810 - 1373102 (+)
Type: CAZyme
Location: 1371810 - 1373102 (+)
Gene ID: C111_contig_23_1117
Type: CAZyme
Location: 1373344 - 1375572 (-)
Type: CAZyme
Location: 1373344 - 1375572 (-)
Gene ID: C111_contig_23_1118
Type: peptidase
Location: 1375707 - 1376606 (-)
Type: peptidase
Location: 1375707 - 1376606 (-)
Gene ID: C111_contig_23_1119
Type: CAZyme
Location: 1376753 - 1378954 (-)
Type: CAZyme
Location: 1376753 - 1378954 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1112 | vegetarian > omnivore | 1.18254 | 0.00450 |
| C111_contig_23_1112 | vegetarian > vegan | 1.25221 | 0.01909 |
| C111_contig_23_1113 | vegetarian > omnivore | 1.17655 | 0.00450 |
| C111_contig_23_1116 | vegetarian > omnivore | 1.51825 | 0.00450 |