Cluster: C111.CMAG_1_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_03620
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_1104 | 1358860 | 1360200 | + | GH177 |
| TC | C111_contig_23 | C111_contig_23_1105 | 1360309 | 1361646 | + | 2.A.1.7.9 |
| CAZyme | C111_contig_23 | C111_contig_23_1106 | 1361660 | 1362847 | + | CE9 |
Gene ID: C111_contig_23_1104
Type: CAZyme
Location: 1358860 - 1360200 (+)
Type: CAZyme
Location: 1358860 - 1360200 (+)
Gene ID: C111_contig_23_1105
Type: TC
Location: 1360309 - 1361646 (+)
Type: TC
Location: 1360309 - 1361646 (+)
Gene ID: C111_contig_23_1106
Type: CAZyme
Location: 1361660 - 1362847 (+)
Type: CAZyme
Location: 1361660 - 1362847 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1104 | vegetarian > omnivore | 1.08840 | 0.00450 |
| C111_contig_23_1105 | vegan > omnivore | 1.00171 | 0.03702 |
| C111_contig_23_1105 | vegetarian > omnivore | 1.10879 | 0.00450 |
| C111_contig_23_1106 | vegetarian > omnivore | 1.21691 | 0.00450 |