Cluster: C111.CMAG_1_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_96 | 83390 | 84331 | + | 2.A.79.1.4 |
| pfam | C111_contig_23 | C111_contig_23_97 | 84328 | 84861 | + | ThrE_2 |
| peptidase | C111_contig_23 | C111_contig_23_98 | 84949 | 86187 | - | M20.003 |
| TC | C111_contig_23 | C111_contig_23_99 | 86248 | 88245 | - | 2.A.67.4.2 |
| TC | C111_contig_23 | C111_contig_23_100 | 88467 | 89417 | + | 2.A.7.3.57 |
| CAZyme | C111_contig_23 | C111_contig_23_101 | 89448 | 90827 | - | CE15 |
| TC | C111_contig_23 | C111_contig_23_102 | 91007 | 92734 | - | 9.B.196.1.2 |
| TF | C111_contig_23 | C111_contig_23_103 | 92954 | 93832 | - | HTH_AraC |
| STP | C111_contig_23 | C111_contig_23_104 | 94055 | 94261 | - | HMA |
| TC | C111_contig_23 | C111_contig_23_105 | 94401 | 96794 | - | 3.A.3.5.20 |
Gene ID: C111_contig_23_96
Type: TC
Location: 83390 - 84331 (+)
Type: TC
Location: 83390 - 84331 (+)
Gene ID: C111_contig_23_97
Type: pfam
Location: 84328 - 84861 (+)
Type: pfam
Location: 84328 - 84861 (+)
Gene ID: C111_contig_23_98
Type: peptidase
Location: 84949 - 86187 (-)
Type: peptidase
Location: 84949 - 86187 (-)
Gene ID: C111_contig_23_99
Type: TC
Location: 86248 - 88245 (-)
Type: TC
Location: 86248 - 88245 (-)
Gene ID: C111_contig_23_100
Type: TC
Location: 88467 - 89417 (+)
Type: TC
Location: 88467 - 89417 (+)
Gene ID: C111_contig_23_101
Type: CAZyme
Location: 89448 - 90827 (-)
Type: CAZyme
Location: 89448 - 90827 (-)
Gene ID: C111_contig_23_102
Type: TC
Location: 91007 - 92734 (-)
Type: TC
Location: 91007 - 92734 (-)
Gene ID: C111_contig_23_103
Type: TF
Location: 92954 - 93832 (-)
Type: TF
Location: 92954 - 93832 (-)
Gene ID: C111_contig_23_104
Type: STP
Location: 94055 - 94261 (-)
Type: STP
Location: 94055 - 94261 (-)
Gene ID: C111_contig_23_105
Type: TC
Location: 94401 - 96794 (-)
Type: TC
Location: 94401 - 96794 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_97 | vegetarian > omnivore | 1.05437 | 0.00450 |
| C111_contig_23_101 | vegetarian > omnivore | 1.07168 | 0.00450 |
| C111_contig_23_103 | vegan > omnivore | 1.19176 | 0.03702 |
| C111_contig_23_103 | vegetarian > omnivore | 1.02608 | 0.00450 |
| C111_contig_23_104 | vegetarian > omnivore | 1.01446 | 0.00450 |
| C111_contig_23_105 | vegetarian > omnivore | 1.49370 | 0.00450 |