Cluster: C111.CMAG_1_CGC19
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_07884
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_1010 | 1248373 | 1249302 | + | GT2 |
| CAZyme | C111_contig_23 | C111_contig_23_1011 | 1249309 | 1250262 | - | GT2 |
| TC | C111_contig_23 | C111_contig_23_1012 | 1250430 | 1253747 | - | 1.B.14.6.3 |
| STP | C111_contig_23 | C111_contig_23_1013 | 1254092 | 1256035 | + | HATPase_c | HisKA | Response_reg |
| pfam | C111_contig_23 | C111_contig_23_1014 | 1256260 | 1257342 | - | APH |
| CAZyme | C111_contig_23 | C111_contig_23_1015 | 1257416 | 1258816 | - | GH109 |
| CAZyme | C111_contig_23 | C111_contig_23_1016 | 1259022 | 1261361 | - | GH92 |
| pfam | C111_contig_23 | C111_contig_23_1017 | 1261763 | 1263076 | + | AA_kinase | ACT_9 |
| CAZyme | C111_contig_23 | C111_contig_23_1018 | 1263149 | 1264447 | + | GH29 |
| pfam | C111_contig_23 | C111_contig_23_1019 | 1264594 | 1265187 | - | Pro_isomerase |
| CAZyme | C111_contig_23 | C111_contig_23_1020 | 1265423 | 1267756 | + | GH95 |
| CAZyme | C111_contig_23 | C111_contig_23_1021 | 1267962 | 1270304 | - | GH106 |
| pfam | C111_contig_23 | C111_contig_23_1022 | 1270671 | 1271036 | + | rhaM |
| TC | C111_contig_23 | C111_contig_23_1023 | 1271205 | 1272740 | - | 3.A.1.128.6 |
| CAZyme | C111_contig_23 | C111_contig_23_1024 | 1272801 | 1274720 | - | GH97 |
| CAZyme | C111_contig_23 | C111_contig_23_1025 | 1274935 | 1275681 | - | CE3 |
Gene ID: C111_contig_23_1010
Type: CAZyme
Location: 1248373 - 1249302 (+)
Type: CAZyme
Location: 1248373 - 1249302 (+)
Gene ID: C111_contig_23_1011
Type: CAZyme
Location: 1249309 - 1250262 (-)
Type: CAZyme
Location: 1249309 - 1250262 (-)
Gene ID: C111_contig_23_1012
Type: TC
Location: 1250430 - 1253747 (-)
Type: TC
Location: 1250430 - 1253747 (-)
Gene ID: C111_contig_23_1013
Type: STP
Location: 1254092 - 1256035 (+)
Type: STP
Location: 1254092 - 1256035 (+)
Gene ID: C111_contig_23_1014
Type: pfam
Location: 1256260 - 1257342 (-)
Type: pfam
Location: 1256260 - 1257342 (-)
Gene ID: C111_contig_23_1015
Type: CAZyme
Location: 1257416 - 1258816 (-)
Type: CAZyme
Location: 1257416 - 1258816 (-)
Gene ID: C111_contig_23_1016
Type: CAZyme
Location: 1259022 - 1261361 (-)
Type: CAZyme
Location: 1259022 - 1261361 (-)
Gene ID: C111_contig_23_1017
Type: pfam
Location: 1261763 - 1263076 (+)
Type: pfam
Location: 1261763 - 1263076 (+)
Gene ID: C111_contig_23_1018
Type: CAZyme
Location: 1263149 - 1264447 (+)
Type: CAZyme
Location: 1263149 - 1264447 (+)
Gene ID: C111_contig_23_1019
Type: pfam
Location: 1264594 - 1265187 (-)
Type: pfam
Location: 1264594 - 1265187 (-)
Gene ID: C111_contig_23_1020
Type: CAZyme
Location: 1265423 - 1267756 (+)
Type: CAZyme
Location: 1265423 - 1267756 (+)
Gene ID: C111_contig_23_1021
Type: CAZyme
Location: 1267962 - 1270304 (-)
Type: CAZyme
Location: 1267962 - 1270304 (-)
Gene ID: C111_contig_23_1022
Type: pfam
Location: 1270671 - 1271036 (+)
Type: pfam
Location: 1270671 - 1271036 (+)
Gene ID: C111_contig_23_1023
Type: TC
Location: 1271205 - 1272740 (-)
Type: TC
Location: 1271205 - 1272740 (-)
Gene ID: C111_contig_23_1024
Type: CAZyme
Location: 1272801 - 1274720 (-)
Type: CAZyme
Location: 1272801 - 1274720 (-)
Gene ID: C111_contig_23_1025
Type: CAZyme
Location: 1274935 - 1275681 (-)
Type: CAZyme
Location: 1274935 - 1275681 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_1010 | vegetarian > omnivore | 1.58065 | 0.00450 |
| C111_contig_23_1010 | vegetarian > vegan | 1.01158 | 0.02154 |
| C111_contig_23_1012 | vegetarian > omnivore | 1.34383 | 0.00450 |
| C111_contig_23_1014 | vegetarian > omnivore | 1.68478 | 0.00450 |
| C111_contig_23_1014 | vegan > omnivore | 1.30397 | 0.03702 |
| C111_contig_23_1015 | vegetarian > omnivore | 1.08007 | 0.00450 |
| C111_contig_23_1016 | vegetarian > vegan | 1.00797 | 0.02154 |
| C111_contig_23_1017 | vegetarian > omnivore | 1.00632 | 0.00450 |
| C111_contig_23_1018 | vegetarian > omnivore | 1.04400 | 0.00450 |
| C111_contig_23_1018 | vegetarian > vegan | 1.10290 | 0.02154 |
| C111_contig_23_1019 | vegetarian > omnivore | 1.03015 | 0.00450 |
| C111_contig_23_1019 | vegetarian > vegan | 1.25413 | 0.02154 |
| C111_contig_23_1021 | vegetarian > omnivore | 1.26036 | 0.00450 |
| C111_contig_23_1022 | vegetarian > omnivore | 1.43371 | 0.00450 |
| C111_contig_23_1023 | vegetarian > omnivore | 1.16252 | 0.00450 |
| C111_contig_23_1025 | vegetarian > omnivore | 1.16792 | 0.00450 |
| C111_contig_23_1025 | vegan > omnivore | 1.16702 | 0.03702 |