Cluster: C111.CMAG_1_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_07883
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_931 | 1148414 | 1149616 | + | 2.A.1.35.1 |
| pfam | C111_contig_23 | C111_contig_23_932 | 1149800 | 1150369 | + | DUF4251 |
| pfam | C111_contig_23 | C111_contig_23_933 | 1150454 | 1151491 | - | AP_endonuc_2 |
| CAZyme | C111_contig_23 | C111_contig_23_934 | 1151548 | 1152924 | - | GH177 |
| CAZyme | C111_contig_23 | C111_contig_23_935 | 1153019 | 1155742 | - | GH2 |
Gene ID: C111_contig_23_931
Type: TC
Location: 1148414 - 1149616 (+)
Type: TC
Location: 1148414 - 1149616 (+)
Gene ID: C111_contig_23_932
Type: pfam
Location: 1149800 - 1150369 (+)
Type: pfam
Location: 1149800 - 1150369 (+)
Gene ID: C111_contig_23_933
Type: pfam
Location: 1150454 - 1151491 (-)
Type: pfam
Location: 1150454 - 1151491 (-)
Gene ID: C111_contig_23_934
Type: CAZyme
Location: 1151548 - 1152924 (-)
Type: CAZyme
Location: 1151548 - 1152924 (-)
Gene ID: C111_contig_23_935
Type: CAZyme
Location: 1153019 - 1155742 (-)
Type: CAZyme
Location: 1153019 - 1155742 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_931 | vegetarian > omnivore | 1.04300 | 0.00450 |
| C111_contig_23_933 | vegetarian > omnivore | 1.72729 | 0.00450 |
| C111_contig_23_933 | vegetarian > vegan | 1.13181 | 0.02154 |