Cluster: C111.CMAG_1_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_07882
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_807 | 1008507 | 1009742 | - | GH88 |
| CAZyme | C111_contig_23 | C111_contig_23_808 | 1009771 | 1011660 | - | PL35 |
| pfam | C111_contig_23 | C111_contig_23_809 | 1011898 | 1013274 | - | DUF4861 |
| pfam | C111_contig_23 | C111_contig_23_810 | 1013488 | 1014582 | + | GLF | NAD_binding_8 |
| CAZyme | C111_contig_23 | C111_contig_23_811 | 1014600 | 1015424 | + | GT111 |
| pfam | C111_contig_23 | C111_contig_23_812 | 1015769 | 1016875 | - | OMP_b-brl_3 |
| pfam | C111_contig_23 | C111_contig_23_813 | 1017064 | 1018155 | - | CarboxypepD_reg | CarbopepD_reg_2 |
| CAZyme | C111_contig_23 | C111_contig_23_814 | 1018355 | 1019326 | + | GT90 |
| pfam | C111_contig_23 | C111_contig_23_815 | 1019404 | 1020396 | - | EamA | EamA |
| CAZyme | C111_contig_23 | C111_contig_23_816 | 1020680 | 1022182 | - | GH29 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_817 | 1022376 | 1022846 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C111_contig_23 | C111_contig_23_818 | 1022839 | 1024926 | - | ATP-cone | NRDD |
| TC | C111_contig_23 | C111_contig_23_819 | 1025478 | 1026641 | + | 2.A.1.7.16 |
Gene ID: C111_contig_23_807
Type: CAZyme
Location: 1008507 - 1009742 (-)
Type: CAZyme
Location: 1008507 - 1009742 (-)
Gene ID: C111_contig_23_808
Type: CAZyme
Location: 1009771 - 1011660 (-)
Type: CAZyme
Location: 1009771 - 1011660 (-)
Gene ID: C111_contig_23_809
Type: pfam
Location: 1011898 - 1013274 (-)
Type: pfam
Location: 1011898 - 1013274 (-)
Gene ID: C111_contig_23_810
Type: pfam
Location: 1013488 - 1014582 (+)
Type: pfam
Location: 1013488 - 1014582 (+)
Gene ID: C111_contig_23_811
Type: CAZyme
Location: 1014600 - 1015424 (+)
Type: CAZyme
Location: 1014600 - 1015424 (+)
Gene ID: C111_contig_23_812
Type: pfam
Location: 1015769 - 1016875 (-)
Type: pfam
Location: 1015769 - 1016875 (-)
Gene ID: C111_contig_23_813
Type: pfam
Location: 1017064 - 1018155 (-)
Type: pfam
Location: 1017064 - 1018155 (-)
Gene ID: C111_contig_23_814
Type: CAZyme
Location: 1018355 - 1019326 (+)
Type: CAZyme
Location: 1018355 - 1019326 (+)
Gene ID: C111_contig_23_815
Type: pfam
Location: 1019404 - 1020396 (-)
Type: pfam
Location: 1019404 - 1020396 (-)
Gene ID: C111_contig_23_816
Type: CAZyme
Location: 1020680 - 1022182 (-)
Type: CAZyme
Location: 1020680 - 1022182 (-)
Gene ID: C111_contig_23_817
Type:
Location: 1022376 - 1022846 (-)
Type:
Location: 1022376 - 1022846 (-)
Gene ID: C111_contig_23_818
Type: pfam
Location: 1022839 - 1024926 (-)
Type: pfam
Location: 1022839 - 1024926 (-)
Gene ID: C111_contig_23_819
Type: TC
Location: 1025478 - 1026641 (+)
Type: TC
Location: 1025478 - 1026641 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_808 | vegetarian > omnivore | 1.32631 | 0.00450 |
| C111_contig_23_809 | vegetarian > omnivore | 1.12253 | 0.00450 |
| C111_contig_23_810 | vegan > omnivore | 1.24753 | 0.03702 |
| C111_contig_23_810 | vegetarian > omnivore | 1.52711 | 0.00450 |
| C111_contig_23_811 | vegetarian > omnivore | 1.60521 | 0.00450 |
| C111_contig_23_812 | vegan > omnivore | 3.68273 | 0.03702 |
| C111_contig_23_812 | vegetarian > omnivore | 2.76460 | 0.00450 |
| C111_contig_23_813 | vegan > omnivore | 4.23022 | 0.03702 |
| C111_contig_23_813 | vegetarian > omnivore | 2.08001 | 0.00450 |
| C111_contig_23_814 | vegetarian > omnivore | 1.27136 | 0.00450 |
| C111_contig_23_817 | vegetarian > omnivore | 1.21639 | 0.00450 |
| C111_contig_23_819 | vegetarian > omnivore | 1.08112 | 0.00450 |