Cluster: C111.CMAG_1_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_01217
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_747 | 924004 | 925191 | - | GT4 |
| pfam | C111_contig_23 | C111_contig_23_748 | 925381 | 926343 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | C111_contig_23 | C111_contig_23_749 | 926556 | 928064 | - | GH3 | GH3_M | GH3_C |
| TC | C111_contig_23 | C111_contig_23_750 | 928143 | 929483 | - | 2.A.38.1.1 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_751 | 929680 | 929982 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | C111_contig_23 | C111_contig_23_752 | 930250 | 933819 | - | Fer4 |
| CAZyme | C111_contig_23 | C111_contig_23_753 | 934060 | 934776 | + | GT51 |
Gene ID: C111_contig_23_747
Type: CAZyme
Location: 924004 - 925191 (-)
Type: CAZyme
Location: 924004 - 925191 (-)
Gene ID: C111_contig_23_748
Type: pfam
Location: 925381 - 926343 (-)
Type: pfam
Location: 925381 - 926343 (-)
Gene ID: C111_contig_23_749
Type: pfam
Location: 926556 - 928064 (-)
Type: pfam
Location: 926556 - 928064 (-)
Gene ID: C111_contig_23_750
Type: TC
Location: 928143 - 929483 (-)
Type: TC
Location: 928143 - 929483 (-)
Gene ID: C111_contig_23_751
Type:
Location: 929680 - 929982 (+)
Type:
Location: 929680 - 929982 (+)
Gene ID: C111_contig_23_752
Type: STP
Location: 930250 - 933819 (-)
Type: STP
Location: 930250 - 933819 (-)
Gene ID: C111_contig_23_753
Type: CAZyme
Location: 934060 - 934776 (+)
Type: CAZyme
Location: 934060 - 934776 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_748 | vegan > omnivore | 1.26049 | 0.03702 |
| C111_contig_23_748 | vegetarian > omnivore | 1.21006 | 0.00450 |
| C111_contig_23_751 | vegan > omnivore | 1.22475 | 0.03702 |
| C111_contig_23_751 | vegetarian > omnivore | 1.79876 | 0.00450 |