Cluster: C111.CMAG_1_CGC14
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_732 | 906746 | 908128 | + | 2.A.21.9.1 |
| pfam | C111_contig_23 | C111_contig_23_733 | 908388 | 908921 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_9 |
| CAZyme | C111_contig_23 | C111_contig_23_734 | 909000 | 912227 | - | GH106 |
Gene ID: C111_contig_23_732
Type: TC
Location: 906746 - 908128 (+)
Type: TC
Location: 906746 - 908128 (+)
Gene ID: C111_contig_23_733
Type: pfam
Location: 908388 - 908921 (-)
Type: pfam
Location: 908388 - 908921 (-)
Gene ID: C111_contig_23_734
Type: CAZyme
Location: 909000 - 912227 (-)
Type: CAZyme
Location: 909000 - 912227 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_732 | vegetarian > omnivore | 1.58579 | 0.00450 |
| C111_contig_23_733 | vegetarian > omnivore | 1.28094 | 0.00450 |
| C111_contig_23_734 | vegetarian > omnivore | 1.14210 | 0.00450 |