Cluster: C111.CMAG_1_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_05185
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_681 | 823196 | 825547 | - | 3.A.11.3.1 |
| TC | C111_contig_23 | C111_contig_23_682 | 825753 | 826646 | + | 2.A.115.1.1 |
| STP | C111_contig_23 | C111_contig_23_683 | 827173 | 827904 | + | Pribosyltran |
| pfam | C111_contig_23 | C111_contig_23_684 | 828149 | 828322 | + | Hc1 |
| CAZyme | C111_contig_23 | C111_contig_23_685 | 828397 | 830535 | - | PL33 |
| sulfatase | C111_contig_23 | C111_contig_23_686 | 830674 | 832818 | - | S1_50 |
| TC | C111_contig_23 | C111_contig_23_687 | 833166 | 836669 | + | 1.B.14.6.1 |
Gene ID: C111_contig_23_681
Type: TC
Location: 823196 - 825547 (-)
Type: TC
Location: 823196 - 825547 (-)
Gene ID: C111_contig_23_682
Type: TC
Location: 825753 - 826646 (+)
Type: TC
Location: 825753 - 826646 (+)
Gene ID: C111_contig_23_683
Type: STP
Location: 827173 - 827904 (+)
Type: STP
Location: 827173 - 827904 (+)
Gene ID: C111_contig_23_684
Type: pfam
Location: 828149 - 828322 (+)
Type: pfam
Location: 828149 - 828322 (+)
Gene ID: C111_contig_23_685
Type: CAZyme
Location: 828397 - 830535 (-)
Type: CAZyme
Location: 828397 - 830535 (-)
Gene ID: C111_contig_23_686
Type: sulfatase
Location: 830674 - 832818 (-)
Type: sulfatase
Location: 830674 - 832818 (-)
Gene ID: C111_contig_23_687
Type: TC
Location: 833166 - 836669 (+)
Type: TC
Location: 833166 - 836669 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_682 | vegetarian > omnivore | 1.37386 | 0.00450 |
| C111_contig_23_683 | vegetarian > omnivore | 1.41986 | 0.00450 |
| C111_contig_23_685 | vegetarian > omnivore | 1.50815 | 0.00450 |
| C111_contig_23_686 | vegetarian > omnivore | 1.07022 | 0.00450 |
| C111_contig_23_687 | vegan > omnivore | 1.44242 | 0.03702 |
| C111_contig_23_687 | vegetarian > omnivore | 1.60981 | 0.00450 |