Cluster: C111.CMAG_1_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_00033
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C111_contig_23 | C111_contig_23_617 | 743506 | 744426 | + | GT2 |
| TC | C111_contig_23 | C111_contig_23_618 | 744423 | 745955 | + | 2.A.66.2.23 |
| pfam | C111_contig_23 | C111_contig_23_619 | 745960 | 747042 | + | Acyl_transf_3 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_620 | 747064 | 748194 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C111_contig_23 | C111_contig_23_621 | 748343 | 749527 | + | GT2 |
Gene ID: C111_contig_23_617
Type: CAZyme
Location: 743506 - 744426 (+)
Type: CAZyme
Location: 743506 - 744426 (+)
Gene ID: C111_contig_23_618
Type: TC
Location: 744423 - 745955 (+)
Type: TC
Location: 744423 - 745955 (+)
Gene ID: C111_contig_23_619
Type: pfam
Location: 745960 - 747042 (+)
Type: pfam
Location: 745960 - 747042 (+)
Gene ID: C111_contig_23_620
Type:
Location: 747064 - 748194 (+)
Type:
Location: 747064 - 748194 (+)
Gene ID: C111_contig_23_621
Type: CAZyme
Location: 748343 - 749527 (+)
Type: CAZyme
Location: 748343 - 749527 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_618 | vegetarian > omnivore | 1.17237 | 0.00450 |
| C111_contig_23_619 | vegetarian > omnivore | 1.18952 | 0.00450 |
| C111_contig_23_620 | vegan > omnivore | 1.17900 | 0.03702 |
| C111_contig_23_620 | vegetarian > omnivore | 2.03542 | 0.00450 |