Cluster: C111.CMAG_1_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: C111.CMAG_1
- CGC Family ID: CGCFAM_00968
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C111_contig_23 | C111_contig_23_8 | 7660 | 8931 | + | 2.A.66.2.10 |
| pfam | C111_contig_23 | C111_contig_23_9 | 8906 | 9703 | + | LicD |
| CAZyme | C111_contig_23 | C111_contig_23_10 | 9745 | 11007 | + | GT4 |
| NULL(UNKNOWN) | C111_contig_23 | C111_contig_23_11 | 11055 | 12290 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C111_contig_23 | C111_contig_23_12 | 12253 | 12981 | + | GT2 |
| CAZyme | C111_contig_23 | C111_contig_23_13 | 12992 | 13825 | + | GT2 |
| CAZyme | C111_contig_23 | C111_contig_23_14 | 13947 | 15023 | + | GT4 |
Gene ID: C111_contig_23_8
Type: TC
Location: 7660 - 8931 (+)
Type: TC
Location: 7660 - 8931 (+)
Gene ID: C111_contig_23_9
Type: pfam
Location: 8906 - 9703 (+)
Type: pfam
Location: 8906 - 9703 (+)
Gene ID: C111_contig_23_10
Type: CAZyme
Location: 9745 - 11007 (+)
Type: CAZyme
Location: 9745 - 11007 (+)
Gene ID: C111_contig_23_11
Type:
Location: 11055 - 12290 (+)
Type:
Location: 11055 - 12290 (+)
Gene ID: C111_contig_23_12
Type: CAZyme
Location: 12253 - 12981 (+)
Type: CAZyme
Location: 12253 - 12981 (+)
Gene ID: C111_contig_23_13
Type: CAZyme
Location: 12992 - 13825 (+)
Type: CAZyme
Location: 12992 - 13825 (+)
Gene ID: C111_contig_23_14
Type: CAZyme
Location: 13947 - 15023 (+)
Type: CAZyme
Location: 13947 - 15023 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A indistinctus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C111_contig_23_8 | vegetarian > omnivore | 3.32392 | 0.00450 |
| C111_contig_23_8 | vegetarian > vegan | 15.31789 | 0.02154 |
| C111_contig_23_9 | vegetarian > omnivore | 2.79533 | 0.00450 |
| C111_contig_23_9 | vegetarian > vegan | 15.42850 | 0.02154 |
| C111_contig_23_10 | vegetarian > omnivore | 2.03922 | 0.00450 |
| C111_contig_23_10 | vegetarian > vegan | 15.24409 | 0.02154 |
| C111_contig_23_12 | vegetarian > omnivore | 1.70804 | 0.00450 |
| C111_contig_23_12 | vegetarian > vegan | 14.98389 | 0.01332 |
| C111_contig_23_13 | vegetarian > omnivore | 1.93075 | 0.00450 |
| C111_contig_23_13 | vegetarian > vegan | 14.83045 | 0.02154 |
| C111_contig_23_14 | vegetarian > omnivore | 3.03758 | 0.00450 |
| C111_contig_23_14 | vegetarian > vegan | 15.09248 | 0.02154 |