Cluster: C11.bin_11_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: C11.bin_11
- CGC Family ID: CGCFAM_00785
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C11_contig_136 | C11_contig_136_859 | 888209 | 889978 | + | 3.A.2.3.2 |
| TC | C11_contig_136 | C11_contig_136_860 | 889981 | 891354 | + | 3.A.2.2.2 |
| TC | C11_contig_136 | C11_contig_136_861 | 891562 | 892221 | + | 3.A.2.2.2 |
| TF | C11_contig_136 | C11_contig_136_862 | 892446 | 893444 | + | LacI |
| CAZyme | C11_contig_136 | C11_contig_136_863 | 893628 | 895322 | + | GH13_18 |
| TC | C11_contig_136 | C11_contig_136_864 | 895298 | 896674 | + | 3.A.1.1.46 |
| TC | C11_contig_136 | C11_contig_136_865 | 896733 | 897620 | + | 3.A.1.1.46 |
| TC | C11_contig_136 | C11_contig_136_866 | 897607 | 898455 | + | 3.A.1.1.46 |
| pfam | C11_contig_136 | C11_contig_136_867 | 898479 | 899534 | + | ADH_zinc_N |
| pfam | C11_contig_136 | C11_contig_136_868 | 899547 | 900338 | + | AP_endonuc_2 |
| CAZyme | C11_contig_136 | C11_contig_136_869 | 900461 | 901501 | + | GH179 |
| CAZyme | C11_contig_136 | C11_contig_136_870 | 901522 | 903816 | + | GH65 |
| pfam | C11_contig_136 | C11_contig_136_871 | 903851 | 904495 | + | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | C11_contig_136 | C11_contig_136_872 | 904508 | 906664 | + | CBM66 |
Gene ID: C11_contig_136_859
Type: TC
Location: 888209 - 889978 (+)
Type: TC
Location: 888209 - 889978 (+)
Gene ID: C11_contig_136_860
Type: TC
Location: 889981 - 891354 (+)
Type: TC
Location: 889981 - 891354 (+)
Gene ID: C11_contig_136_861
Type: TC
Location: 891562 - 892221 (+)
Type: TC
Location: 891562 - 892221 (+)
Gene ID: C11_contig_136_862
Type: TF
Location: 892446 - 893444 (+)
Type: TF
Location: 892446 - 893444 (+)
Gene ID: C11_contig_136_863
Type: CAZyme
Location: 893628 - 895322 (+)
Type: CAZyme
Location: 893628 - 895322 (+)
Gene ID: C11_contig_136_864
Type: TC
Location: 895298 - 896674 (+)
Type: TC
Location: 895298 - 896674 (+)
Gene ID: C11_contig_136_865
Type: TC
Location: 896733 - 897620 (+)
Type: TC
Location: 896733 - 897620 (+)
Gene ID: C11_contig_136_866
Type: TC
Location: 897607 - 898455 (+)
Type: TC
Location: 897607 - 898455 (+)
Gene ID: C11_contig_136_867
Type: pfam
Location: 898479 - 899534 (+)
Type: pfam
Location: 898479 - 899534 (+)
Gene ID: C11_contig_136_868
Type: pfam
Location: 899547 - 900338 (+)
Type: pfam
Location: 899547 - 900338 (+)
Gene ID: C11_contig_136_869
Type: CAZyme
Location: 900461 - 901501 (+)
Type: CAZyme
Location: 900461 - 901501 (+)
Gene ID: C11_contig_136_870
Type: CAZyme
Location: 901522 - 903816 (+)
Type: CAZyme
Location: 901522 - 903816 (+)
Gene ID: C11_contig_136_871
Type: pfam
Location: 903851 - 904495 (+)
Type: pfam
Location: 903851 - 904495 (+)
Gene ID: C11_contig_136_872
Type: CAZyme
Location: 904508 - 906664 (+)
Type: CAZyme
Location: 904508 - 906664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea_D
Species
Dorea_D sp900543415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.