Cluster: BrooksB_2017_SRR5405927_bin.2_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405927_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_19 | 42663 | 43784 | - | GT28 |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_20 | 43774 | 45120 | - | 2.A.103.1.3 |
| pfam | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_21 | 45123 | 46562 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_22 | 46559 | 47671 | - | 9.B.146.1.6 |
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_19
Type: CAZyme
Location: 42663 - 43784 (-)
Type: CAZyme
Location: 42663 - 43784 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_20
Type: TC
Location: 43774 - 45120 (-)
Type: TC
Location: 43774 - 45120 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_21
Type: pfam
Location: 45123 - 46562 (-)
Type: pfam
Location: 45123 - 46562 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_22
Type: TC
Location: 46559 - 47671 (-)
Type: TC
Location: 46559 - 47671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.