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Cluster: BrooksB_2017_SRR5405927_bin.2_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BrooksB_2017_SRR5405927_bin.2_k119_1100 BrooksB_2017_SRR5405927_bin.2_k119_1100_42 58326 59228 - 3.A.1.1.36
TC BrooksB_2017_SRR5405927_bin.2_k119_1100 BrooksB_2017_SRR5405927_bin.2_k119_1100_43 59225 60301 - 3.A.1.1.36
CAZyme BrooksB_2017_SRR5405927_bin.2_k119_1100 BrooksB_2017_SRR5405927_bin.2_k119_1100_44 60301 62136 - GH2
pfam BrooksB_2017_SRR5405927_bin.2_k119_1100 BrooksB_2017_SRR5405927_bin.2_k119_1100_45 62520 62735 - HTH_17
TC BrooksB_2017_SRR5405927_bin.2_k119_1100 BrooksB_2017_SRR5405927_bin.2_k119_1100_46 63071 64447 + 2.A.38.4.3
TC BrooksB_2017_SRR5405927_bin.2_k119_1100 BrooksB_2017_SRR5405927_bin.2_k119_1100_47 64600 65268 - 2.A.38.4.4
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_1100_42
Type: TC
Location: 58326 - 59228 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_1100_43
Type: TC
Location: 59225 - 60301 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_1100_44
Type: CAZyme
Location: 60301 - 62136 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_1100_45
Type: pfam
Location: 62520 - 62735 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_1100_46
Type: TC
Location: 63071 - 64447 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_1100_47
Type: TC
Location: 64600 - 65268 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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