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Cluster: BrooksB_2017_SRR5405927_bin.2_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_299 380612 381496 + 9.B.1.1.5
pfam BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_300 381543 382496 + Aldose_epim | Aldose_epim
pfam BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_301 382638 385454 - FtsX | FtsX
TC BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_302 385455 386204 - 3.A.1.125.3
NULL(UNKNOWN) BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_303 386271 387812 - NULL(UNKNOWN)
[View Structural Homologs]
TC BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_304 387813 388511 - 3.A.1.122.2
pfam BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_305 388642 390048 + HisKA_3
TF BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_306 390029 390715 + GerE
CAZyme BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_307 390783 391964 - CE9
pfam BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_308 392216 393019 + NTP_transferase | NTP_transf_3
TC BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_309 393209 394498 + 3.A.1.1.48
TC BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_310 394739 395746 + 3.A.1.1.48
TC BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_311 395739 396671 + 3.A.1.1.48
peptidase BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_312 396959 398320 + U32.UPW
pfam BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_313 398538 400064 - FGGY_N | FGGY_C
TC BrooksB_2017_SRR5405927_bin.2_k119_3356 BrooksB_2017_SRR5405927_bin.2_k119_3356_314 400123 400944 - 1.A.8.2.1
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_299
Type: TC
Location: 380612 - 381496 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_300
Type: pfam
Location: 381543 - 382496 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_301
Type: pfam
Location: 382638 - 385454 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_302
Type: TC
Location: 385455 - 386204 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_303
Type:
Location: 386271 - 387812 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_304
Type: TC
Location: 387813 - 388511 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_305
Type: pfam
Location: 388642 - 390048 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_306
Type: TF
Location: 390029 - 390715 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_307
Type: CAZyme
Location: 390783 - 391964 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_308
Type: pfam
Location: 392216 - 393019 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_309
Type: TC
Location: 393209 - 394498 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_310
Type: TC
Location: 394739 - 395746 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_311
Type: TC
Location: 395739 - 396671 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_312
Type: peptidase
Location: 396959 - 398320 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_313
Type: pfam
Location: 398538 - 400064 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_314
Type: TC
Location: 400123 - 400944 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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