Cluster: BrooksB_2017_SRR5405927_bin.2_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405927_bin.2
- CGC Family ID: CGCFAM_02488
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_211 | 253889 | 255262 | - | 2.A.9.3.5 |
| pfam | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_212 | 255606 | 255875 | - | Ribonuclease_P |
| STP | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_213 | 256500 | 257912 | + | AAA |
| CAZyme | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_214 | 258365 | 260806 | + | GT51 |
| pfam | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_215 | 261031 | 261315 | + | Ribosomal_S6 |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_216 | 261336 | 261911 | + | 3.A.7.19.1 |
| pfam | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_217 | 261956 | 262198 | + | Ribosomal_S18 |
| pfam | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_218 | 262214 | 262675 | + | Ribosomal_L9_N | Ribosomal_L9_C |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_219 | 262806 | 264119 | - | 2.A.66.1.28 |
| pfam | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_220 | 264356 | 265681 | + | DnaB | DnaB_C | AAA_25 |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3356 | BrooksB_2017_SRR5405927_bin.2_k119_3356_221 | 265721 | 268282 | - | 2.A.6.5.5 |
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_211
Type: TC
Location: 253889 - 255262 (-)
Type: TC
Location: 253889 - 255262 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_212
Type: pfam
Location: 255606 - 255875 (-)
Type: pfam
Location: 255606 - 255875 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_213
Type: STP
Location: 256500 - 257912 (+)
Type: STP
Location: 256500 - 257912 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_214
Type: CAZyme
Location: 258365 - 260806 (+)
Type: CAZyme
Location: 258365 - 260806 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_215
Type: pfam
Location: 261031 - 261315 (+)
Type: pfam
Location: 261031 - 261315 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_216
Type: TC
Location: 261336 - 261911 (+)
Type: TC
Location: 261336 - 261911 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_217
Type: pfam
Location: 261956 - 262198 (+)
Type: pfam
Location: 261956 - 262198 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_218
Type: pfam
Location: 262214 - 262675 (+)
Type: pfam
Location: 262214 - 262675 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_219
Type: TC
Location: 262806 - 264119 (-)
Type: TC
Location: 262806 - 264119 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_220
Type: pfam
Location: 264356 - 265681 (+)
Type: pfam
Location: 264356 - 265681 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3356_221
Type: TC
Location: 265721 - 268282 (-)
Type: TC
Location: 265721 - 268282 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.