Cluster: BrooksB_2017_SRR5405927_bin.2_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405927_bin.2
- CGC Family ID: CGCFAM_02666
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_134 | 179096 | 180682 | + | 2.A.81.1.3 |
| pfam | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_135 | 180703 | 181644 | - | CTP_transf_like | Flavokinase | FAD_syn |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_136 | 181696 | 181848 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_137 | 182103 | 183473 | - | GH4 |
| TF | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_138 | 183470 | 184207 | - | HTH_DeoR |
| STP | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_139 | 184288 | 185220 | + | PfkB |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_140 | 185247 | 186605 | + | 3.A.1.1.24 |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_141 | 186679 | 187572 | + | 3.A.1.1.37 |
| TC | BrooksB_2017_SRR5405927_bin.2_k119_3246 | BrooksB_2017_SRR5405927_bin.2_k119_3246_142 | 187575 | 188381 | + | 3.A.1.1.30 |
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_134
Type: TC
Location: 179096 - 180682 (+)
Type: TC
Location: 179096 - 180682 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_135
Type: pfam
Location: 180703 - 181644 (-)
Type: pfam
Location: 180703 - 181644 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_136
Type:
Location: 181696 - 181848 (-)
Type:
Location: 181696 - 181848 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_137
Type: CAZyme
Location: 182103 - 183473 (-)
Type: CAZyme
Location: 182103 - 183473 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_138
Type: TF
Location: 183470 - 184207 (-)
Type: TF
Location: 183470 - 184207 (-)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_139
Type: STP
Location: 184288 - 185220 (+)
Type: STP
Location: 184288 - 185220 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_140
Type: TC
Location: 185247 - 186605 (+)
Type: TC
Location: 185247 - 186605 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_141
Type: TC
Location: 186679 - 187572 (+)
Type: TC
Location: 186679 - 187572 (+)
Gene ID: BrooksB_2017_SRR5405927_bin.2_k119_3246_142
Type: TC
Location: 187575 - 188381 (+)
Type: TC
Location: 187575 - 188381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.