dbCAN HGM

Cluster: BrooksB_2017_SRR5405894_bin.8_CGC65

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
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🧬 Cluster Details

Gene Count: 14
CAZyme Count: 2
Substrate:
Genome ID: BrooksB_2017_SRR5405894_bin.8
CGC Family ID: CGCFAM_04185
Continent: North America
Source Study: Zeng et al., 2022 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_41	37508	38881	-	4.A.5.1.4
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_42	38921	39205	-	4.A.5.1.3
pfam	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_43	39219	39692	-	PTS_EIIA_2
TF	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_44	39693	41636	-	HTH_11 \| Mga
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_45	42247	43971	-	3.A.1.12.5
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_46	43964	45163	-	3.A.1.12.5
CAZyme	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_47	45328	46668	-	AA7
TF	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_48	47018	47665	-	GntR
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_49	47879	49054	+	2.A.41.1.2
TF	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_50	49107	50963	-	HTH_11 \| Mga
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_51	51055	52359	-	4.A.3.2.6
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_52	52366	52656	-	4.A.3.2.2
CAZyme	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_53	52721	54115	-	GH1
TC	BrooksB_2017_SRR5405894_bin.8_k119_6647	BrooksB_2017_SRR5405894_bin.8_k119_6647_54	54108	54443	-	4.A.3.2.2

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_41
Type: TC
Location: 37508 - 38881 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_42
Type: TC
Location: 38921 - 39205 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_43
Type: pfam
Location: 39219 - 39692 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_44
Type: TF
Location: 39693 - 41636 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_45
Type: TC
Location: 42247 - 43971 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_46
Type: TC
Location: 43964 - 45163 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_47
Type: CAZyme
Location: 45328 - 46668 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_48
Type: TF
Location: 47018 - 47665 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_49
Type: TC
Location: 47879 - 49054 (+)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_50
Type: TF
Location: 49107 - 50963 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_51
Type: TC
Location: 51055 - 52359 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_52
Type: TC
Location: 52366 - 52656 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_53
Type: CAZyme
Location: 52721 - 54115 (-)

Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_6647_54
Type: TC
Location: 54108 - 54443 (-)

Taxonomic Lineage

Domain

Bacteria

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Phylum

Bacillota

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Class

Bacilli

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Order

Lactobacillales

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Family

Enterococcaceae

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Genus

Enterococcus_A

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Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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