dbCAN Logo

Cluster: BrooksB_2017_SRR5405894_bin.8_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_34 35794 37299 - 3.A.1.2.19
STP BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_35 37458 38606 - SBP_bac_1
TF BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_36 38593 40083 - HTH_AraC
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_37 40080 41843 - 9.B.33.1.1
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_38 43145 43630 - 4.A.1.1.11
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_39 43670 46480 - CBM67 | GH78
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_40 46482 47885 - 4.A.1.2.2
TF BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_41 48043 48993 + 0035607
TF BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_42 49092 49919 - HTH_AraC | HTH_AraC
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_43 50299 51585 + 4.A.3.2.2
pfam BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_44 51606 51926 + Glyco_hydro_1
pfam BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_45 51982 52968 - ArAE_1 | ArAE_1_C
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_46 53195 54325 - 3.B.1.1.2
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_47 54341 54685 - 3.B.1.1.3
pfam BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_48 54698 54988 - OAD_gamma
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_49 54997 56394 - 3.B.1.1.6
TC BrooksB_2017_SRR5405894_bin.8_k119_2491 BrooksB_2017_SRR5405894_bin.8_k119_2491_50 56467 57735 - 2.A.47.4.5
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_34
Type: TC
Location: 35794 - 37299 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_35
Type: STP
Location: 37458 - 38606 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_36
Type: TF
Location: 38593 - 40083 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_37
Type: TC
Location: 40080 - 41843 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_38
Type: TC
Location: 43145 - 43630 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_39
Type: CAZyme
Location: 43670 - 46480 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_40
Type: TC
Location: 46482 - 47885 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_41
Type: TF
Location: 48043 - 48993 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_42
Type: TF
Location: 49092 - 49919 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_43
Type: TC
Location: 50299 - 51585 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_44
Type: pfam
Location: 51606 - 51926 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_45
Type: pfam
Location: 51982 - 52968 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_46
Type: TC
Location: 53195 - 54325 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_47
Type: TC
Location: 54341 - 54685 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_48
Type: pfam
Location: 54698 - 54988 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_49
Type: TC
Location: 54997 - 56394 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_2491_50
Type: TC
Location: 56467 - 57735 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Enterococcaceae
→
Genus
Enterococcus_A
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List