Cluster: BrooksB_2017_SRR5405894_bin.8_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: BrooksB_2017_SRR5405894_bin.8
- CGC Family ID: CGCFAM_00645
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405894_bin.8_k119_1289 | BrooksB_2017_SRR5405894_bin.8_k119_1289_1 | 658 | 2091 | + | GH1 |
| TF | BrooksB_2017_SRR5405894_bin.8_k119_1289 | BrooksB_2017_SRR5405894_bin.8_k119_1289_2 | 2203 | 2907 | + | GntR |
| TC | BrooksB_2017_SRR5405894_bin.8_k119_1289 | BrooksB_2017_SRR5405894_bin.8_k119_1289_3 | 3077 | 4417 | + | 4.A.3.2.9 |
| CAZyme | BrooksB_2017_SRR5405894_bin.8_k119_1289 | BrooksB_2017_SRR5405894_bin.8_k119_1289_4 | 4477 | 5877 | + | GH1 |
| pfam | BrooksB_2017_SRR5405894_bin.8_k119_1289 | BrooksB_2017_SRR5405894_bin.8_k119_1289_5 | 5855 | 6745 | + | ROK |
| CAZyme | BrooksB_2017_SRR5405894_bin.8_k119_1289 | BrooksB_2017_SRR5405894_bin.8_k119_1289_6 | 7153 | 9588 | + | GH39 |
| TC | BrooksB_2017_SRR5405894_bin.8_k119_1289 | BrooksB_2017_SRR5405894_bin.8_k119_1289_7 | 9794 | 11191 | + | 2.A.2.3.6 |
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1289_1
Type: CAZyme
Location: 658 - 2091 (+)
Type: CAZyme
Location: 658 - 2091 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1289_2
Type: TF
Location: 2203 - 2907 (+)
Type: TF
Location: 2203 - 2907 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1289_3
Type: TC
Location: 3077 - 4417 (+)
Type: TC
Location: 3077 - 4417 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1289_4
Type: CAZyme
Location: 4477 - 5877 (+)
Type: CAZyme
Location: 4477 - 5877 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1289_5
Type: pfam
Location: 5855 - 6745 (+)
Type: pfam
Location: 5855 - 6745 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1289_6
Type: CAZyme
Location: 7153 - 9588 (+)
Type: CAZyme
Location: 7153 - 9588 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1289_7
Type: TC
Location: 9794 - 11191 (+)
Type: TC
Location: 9794 - 11191 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.