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Cluster: BrooksB_2017_SRR5405894_bin.8_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_8 10078 10530 + 4.A.6.2.1
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_9 10556 11326 + 4.A.6.1.17
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_10 11319 12143 + 4.A.6.1.19
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_11 12159 12578 + 4.A.6.1.16
TF BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_12 12790 13680 - HTH_5
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_13 13964 15244 + 3.A.1.1.3
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_14 15365 16273 + 3.A.1.1.36
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_15 16286 17143 + 3.A.1.1.34
pfam BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_16 17157 17726 + DUF624
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_17 17743 19263 + GH51_1
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_18 19277 20248 + GH43_26
CAZyme BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_19 20266 21705 + GH51_1
pfam BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_20 21709 21951 + DUF6171
TC BrooksB_2017_SRR5405894_bin.8_k119_1279 BrooksB_2017_SRR5405894_bin.8_k119_1279_21 22000 23109 + 3.A.1.1.27
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_8
Type: TC
Location: 10078 - 10530 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_9
Type: TC
Location: 10556 - 11326 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_10
Type: TC
Location: 11319 - 12143 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_11
Type: TC
Location: 12159 - 12578 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_12
Type: TF
Location: 12790 - 13680 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_13
Type: TC
Location: 13964 - 15244 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_14
Type: TC
Location: 15365 - 16273 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_15
Type: TC
Location: 16286 - 17143 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_16
Type: pfam
Location: 17157 - 17726 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_17
Type: CAZyme
Location: 17743 - 19263 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_18
Type: CAZyme
Location: 19277 - 20248 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_19
Type: CAZyme
Location: 20266 - 21705 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_20
Type: pfam
Location: 21709 - 21951 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1279_21
Type: TC
Location: 22000 - 23109 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Enterococcaceae
→
Genus
Enterococcus_A
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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