Cluster: BrooksB_2017_SRR5405894_bin.8_CGC10
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: BrooksB_2017_SRR5405894_bin.8
- CGC Family ID: CGCFAM_02701
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_45 | 42259 | 44205 | + | 4.A.1.2.13 |
| CAZyme | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_46 | 44222 | 45844 | + | GH13_29 |
| TC | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_47 | 45875 | 46381 | - | 2.A.88.9.2 |
| pfam | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_48 | 46500 | 47252 | - | adh_short | KR | adh_short_C2 |
| pfam | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_49 | 47249 | 47470 | - | Tad2-like |
| CAZyme | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_50 | 47626 | 50016 | - | GT51 |
| pfam | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_51 | 50346 | 51608 | + | tRNA-synt_1b | S4 | SYY_C-terminal |
| TC | BrooksB_2017_SRR5405894_bin.8_k119_1154 | BrooksB_2017_SRR5405894_bin.8_k119_1154_52 | 51778 | 52683 | + | 2.A.69.4.6 |
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_45
Type: TC
Location: 42259 - 44205 (+)
Type: TC
Location: 42259 - 44205 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_46
Type: CAZyme
Location: 44222 - 45844 (+)
Type: CAZyme
Location: 44222 - 45844 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_47
Type: TC
Location: 45875 - 46381 (-)
Type: TC
Location: 45875 - 46381 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_48
Type: pfam
Location: 46500 - 47252 (-)
Type: pfam
Location: 46500 - 47252 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_49
Type: pfam
Location: 47249 - 47470 (-)
Type: pfam
Location: 47249 - 47470 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_50
Type: CAZyme
Location: 47626 - 50016 (-)
Type: CAZyme
Location: 47626 - 50016 (-)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_51
Type: pfam
Location: 50346 - 51608 (+)
Type: pfam
Location: 50346 - 51608 (+)
Gene ID: BrooksB_2017_SRR5405894_bin.8_k119_1154_52
Type: TC
Location: 51778 - 52683 (+)
Type: TC
Location: 51778 - 52683 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.