Cluster: BrooksB_2017_SRR5405854_bin.5_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405854_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405854_bin.5_k141_521 | BrooksB_2017_SRR5405854_bin.5_k141_521_1 | 1 | 411 | - | 3.A.11.1.3 |
| pfam | BrooksB_2017_SRR5405854_bin.5_k141_521 | BrooksB_2017_SRR5405854_bin.5_k141_521_2 | 481 | 936 | + | Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_7 | Acetyltransf_10 |
| TF | BrooksB_2017_SRR5405854_bin.5_k141_521 | BrooksB_2017_SRR5405854_bin.5_k141_521_3 | 1117 | 2130 | + | LacI |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_521 | BrooksB_2017_SRR5405854_bin.5_k141_521_4 | 2239 | 3549 | + | 3.A.1.1.20 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_521 | BrooksB_2017_SRR5405854_bin.5_k141_521_5 | 3645 | 4547 | + | 3.A.1.1.20 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_521 | BrooksB_2017_SRR5405854_bin.5_k141_521_6 | 4549 | 5394 | + | 3.A.1.1.20 |
| CAZyme | BrooksB_2017_SRR5405854_bin.5_k141_521 | BrooksB_2017_SRR5405854_bin.5_k141_521_7 | 5404 | 6723 | + | GH32 |
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_521_1
Type: TC
Location: 1 - 411 (-)
Type: TC
Location: 1 - 411 (-)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_521_2
Type: pfam
Location: 481 - 936 (+)
Type: pfam
Location: 481 - 936 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_521_3
Type: TF
Location: 1117 - 2130 (+)
Type: TF
Location: 1117 - 2130 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_521_4
Type: TC
Location: 2239 - 3549 (+)
Type: TC
Location: 2239 - 3549 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_521_5
Type: TC
Location: 3645 - 4547 (+)
Type: TC
Location: 3645 - 4547 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_521_6
Type: TC
Location: 4549 - 5394 (+)
Type: TC
Location: 4549 - 5394 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_521_7
Type: CAZyme
Location: 5404 - 6723 (+)
Type: CAZyme
Location: 5404 - 6723 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.