Cluster: BrooksB_2017_SRR5405854_bin.5_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405854_bin.5
- CGC Family ID: CGCFAM_01421
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_10 | 9354 | 10133 | - | CE1 |
| pfam | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_11 | 10202 | 11863 | - | Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP |
| pfam | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_12 | 12142 | 14364 | - | DHH | DHHA1 | ssDNA-exonuc_C | RecJ_OB |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_13 | 14541 | 15299 | + | 3.A.1.3.9 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_14 | 15310 | 16104 | + | 3.A.1.3.16 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_15 | 16117 | 16794 | + | 3.A.1.3.16 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_16 | 16804 | 17463 | + | 3.A.1.3.18 |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_17 | 17608 | 17970 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_18 | 18028 | 18798 | + | NAD_binding_1 | FAD_binding_8 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_3381 | BrooksB_2017_SRR5405854_bin.5_k141_3381_19 | 18894 | 20024 | - | 3.A.1.1.28 |
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_10
Type: CAZyme
Location: 9354 - 10133 (-)
Type: CAZyme
Location: 9354 - 10133 (-)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_11
Type: pfam
Location: 10202 - 11863 (-)
Type: pfam
Location: 10202 - 11863 (-)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_12
Type: pfam
Location: 12142 - 14364 (-)
Type: pfam
Location: 12142 - 14364 (-)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_13
Type: TC
Location: 14541 - 15299 (+)
Type: TC
Location: 14541 - 15299 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_14
Type: TC
Location: 15310 - 16104 (+)
Type: TC
Location: 15310 - 16104 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_15
Type: TC
Location: 16117 - 16794 (+)
Type: TC
Location: 16117 - 16794 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_16
Type: TC
Location: 16804 - 17463 (+)
Type: TC
Location: 16804 - 17463 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_17
Type:
Location: 17608 - 17970 (+)
Type:
Location: 17608 - 17970 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_18
Type: pfam
Location: 18028 - 18798 (+)
Type: pfam
Location: 18028 - 18798 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_3381_19
Type: TC
Location: 18894 - 20024 (-)
Type: TC
Location: 18894 - 20024 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.