Cluster: BrooksB_2017_SRR5405854_bin.5_CGC11
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: BrooksB_2017_SRR5405854_bin.5
- CGC Family ID: CGCFAM_04157
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_1 | 38 | 742 | + | 3.A.1.15.3 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_2 | 735 | 1541 | + | 3.A.1.15.3 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_3 | 1551 | 3056 | + | 3.A.1.15.3 |
| TF | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_4 | 4242 | 5015 | - | HTH_DeoR |
| pfam | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_5 | 5191 | 6594 | + | FGGY_N | FGGY_C |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_6 | 6623 | 7915 | + | 3.A.1.1.47 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_7 | 8002 | 8931 | + | 3.A.1.1.47 |
| TC | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_8 | 8934 | 9773 | + | 3.A.1.1.47 |
| CAZyme | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_9 | 9770 | 11089 | + | GH29 |
| CAZyme | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_10 | 11095 | 12966 | + | GH36 |
| CAZyme | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_11 | 12988 | 15210 | + | GH36 |
| CAZyme | BrooksB_2017_SRR5405854_bin.5_k141_2826 | BrooksB_2017_SRR5405854_bin.5_k141_2826_12 | 15224 | 18241 | + | CBM51 | CBM51 | GH98 |
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_1
Type: TC
Location: 38 - 742 (+)
Type: TC
Location: 38 - 742 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_2
Type: TC
Location: 735 - 1541 (+)
Type: TC
Location: 735 - 1541 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_3
Type: TC
Location: 1551 - 3056 (+)
Type: TC
Location: 1551 - 3056 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_4
Type: TF
Location: 4242 - 5015 (-)
Type: TF
Location: 4242 - 5015 (-)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_5
Type: pfam
Location: 5191 - 6594 (+)
Type: pfam
Location: 5191 - 6594 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_6
Type: TC
Location: 6623 - 7915 (+)
Type: TC
Location: 6623 - 7915 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_7
Type: TC
Location: 8002 - 8931 (+)
Type: TC
Location: 8002 - 8931 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_8
Type: TC
Location: 8934 - 9773 (+)
Type: TC
Location: 8934 - 9773 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_9
Type: CAZyme
Location: 9770 - 11089 (+)
Type: CAZyme
Location: 9770 - 11089 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_10
Type: CAZyme
Location: 11095 - 12966 (+)
Type: CAZyme
Location: 11095 - 12966 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_11
Type: CAZyme
Location: 12988 - 15210 (+)
Type: CAZyme
Location: 12988 - 15210 (+)
Gene ID: BrooksB_2017_SRR5405854_bin.5_k141_2826_12
Type: CAZyme
Location: 15224 - 18241 (+)
Type: CAZyme
Location: 15224 - 18241 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.