Cluster: BrooksB_2017_SRR5405742_bin.5_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_129 | 137536 | 138588 | - | GT28 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_130 | 138597 | 139781 | - | 2.A.103.1.1 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_131 | 139797 | 141110 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_132 | 141173 | 142255 | - | 9.B.146.1.6 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_129
Type: CAZyme
Location: 137536 - 138588 (-)
Type: CAZyme
Location: 137536 - 138588 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_130
Type: TC
Location: 138597 - 139781 (-)
Type: TC
Location: 138597 - 139781 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_131
Type: pfam
Location: 139797 - 141110 (-)
Type: pfam
Location: 139797 - 141110 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_132
Type: TC
Location: 141173 - 142255 (-)
Type: TC
Location: 141173 - 142255 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_1741_132 | vegan > omnivore | 1.31646 | 0.00732 |