Cluster: BrooksB_2017_SRR5405742_bin.5_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- CGC Family ID: CGCFAM_07591
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_61 | 68286 | 70190 | + | 2.A.37.1.2 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_62 | 70227 | 72362 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_63 | 72482 | 73462 | - | 3.A.1.15.5 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_64 | 73630 | 74391 | - | ThiF |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_1741 | BrooksB_2017_SRR5405742_bin.5_k141_1741_65 | 74391 | 75518 | - | GH102 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_61
Type: TC
Location: 68286 - 70190 (+)
Type: TC
Location: 68286 - 70190 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_62
Type: pfam
Location: 70227 - 72362 (-)
Type: pfam
Location: 70227 - 72362 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_63
Type: TC
Location: 72482 - 73462 (-)
Type: TC
Location: 72482 - 73462 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_64
Type: pfam
Location: 73630 - 74391 (-)
Type: pfam
Location: 73630 - 74391 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_1741_65
Type: CAZyme
Location: 74391 - 75518 (-)
Type: CAZyme
Location: 74391 - 75518 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_1741_61 | vegetarian > omnivore | 1.00527 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_1741_62 | vegan > omnivore | 1.26506 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_1741_62 | vegetarian > omnivore | 1.38690 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_1741_63 | vegan > omnivore | 1.29359 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_1741_63 | vegetarian > omnivore | 1.04694 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_1741_64 | vegan > omnivore | 1.42147 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_1741_64 | vegetarian > omnivore | 1.56040 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_1741_65 | vegetarian > omnivore | 1.30903 | 0.00460 |