Cluster: BrooksB_2017_SRR5405742_bin.5_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_20 | 20626 | 21399 | - | 3.A.1.14.19 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_21 | 21399 | 22448 | - | 3.A.1.14.5 |
| STP | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_22 | 22464 | 23579 | - | Peripla_BP_2 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_23 | 23677 | 24816 | - | CCP_MauG |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_24 | 24896 | 26014 | - | GH103 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_25 | 26048 | 26851 | - | GT2 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_26 | 26874 | 27755 | - | GT2 |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_27 | 27748 | 28947 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_28 | 28956 | 29726 | - | GT25 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_20
Type: TC
Location: 20626 - 21399 (-)
Type: TC
Location: 20626 - 21399 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_21
Type: TC
Location: 21399 - 22448 (-)
Type: TC
Location: 21399 - 22448 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_22
Type: STP
Location: 22464 - 23579 (-)
Type: STP
Location: 22464 - 23579 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_23
Type: pfam
Location: 23677 - 24816 (-)
Type: pfam
Location: 23677 - 24816 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_24
Type: CAZyme
Location: 24896 - 26014 (-)
Type: CAZyme
Location: 24896 - 26014 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_25
Type: CAZyme
Location: 26048 - 26851 (-)
Type: CAZyme
Location: 26048 - 26851 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_26
Type: CAZyme
Location: 26874 - 27755 (-)
Type: CAZyme
Location: 26874 - 27755 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_27
Type:
Location: 27748 - 28947 (-)
Type:
Location: 27748 - 28947 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_28
Type: CAZyme
Location: 28956 - 29726 (-)
Type: CAZyme
Location: 28956 - 29726 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_862_22 | vegan > omnivore | 1.66669 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_862_22 | vegetarian > omnivore | 1.14090 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_862_26 | vegetarian > omnivore | 2.04667 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_862_26 | vegetarian > vegan | 1.53357 | 0.03878 |