Cluster: BrooksB_2017_SRR5405742_bin.5_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_7 | 7569 | 9968 | + | GT51 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_8 | 10187 | 12091 | + | 2.A.108.2.10 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_9 | 12120 | 12641 | + | 2.A.108.2.10 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_10 | 12757 | 14151 | + | YHS | FtrD-like |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_11 | 14151 | 15491 | + | 3.A.1.122.8 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_12 | 15478 | 16611 | + | FtsX | MacB_PCD |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_862 | BrooksB_2017_SRR5405742_bin.5_k141_862_13 | 16613 | 17284 | + | 3.A.1.122.8 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_7
Type: CAZyme
Location: 7569 - 9968 (+)
Type: CAZyme
Location: 7569 - 9968 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_8
Type: TC
Location: 10187 - 12091 (+)
Type: TC
Location: 10187 - 12091 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_9
Type: TC
Location: 12120 - 12641 (+)
Type: TC
Location: 12120 - 12641 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_10
Type: pfam
Location: 12757 - 14151 (+)
Type: pfam
Location: 12757 - 14151 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_11
Type: TC
Location: 14151 - 15491 (+)
Type: TC
Location: 14151 - 15491 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_12
Type: pfam
Location: 15478 - 16611 (+)
Type: pfam
Location: 15478 - 16611 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_862_13
Type: TC
Location: 16613 - 17284 (+)
Type: TC
Location: 16613 - 17284 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_862_8 | vegetarian > vegan | 1.10801 | 0.02666 |
| BrooksB_2017_SRR5405742_bin.5_k141_862_10 | vegetarian > vegan | 1.75550 | 0.02445 |