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Cluster: BrooksB_2017_SRR5405742_bin.5_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme BrooksB_2017_SRR5405742_bin.5_k141_3688 BrooksB_2017_SRR5405742_bin.5_k141_3688_468 493425 496451 - GH2
pfam BrooksB_2017_SRR5405742_bin.5_k141_3688 BrooksB_2017_SRR5405742_bin.5_k141_3688_469 496573 497772 - PMI_typeI_cat | MPI_cupin_dom
TC BrooksB_2017_SRR5405742_bin.5_k141_3688 BrooksB_2017_SRR5405742_bin.5_k141_3688_470 497846 498346 - 4.A.1.1.1
TC BrooksB_2017_SRR5405742_bin.5_k141_3688 BrooksB_2017_SRR5405742_bin.5_k141_3688_471 498406 500133 - 8.A.7.1.1
TC BrooksB_2017_SRR5405742_bin.5_k141_3688 BrooksB_2017_SRR5405742_bin.5_k141_3688_472 500213 500470 - 8.A.8.1.1
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3688_468
Type: CAZyme
Location: 493425 - 496451 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3688_469
Type: pfam
Location: 496573 - 497772 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3688_470
Type: TC
Location: 497846 - 498346 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3688_471
Type: TC
Location: 498406 - 500133 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3688_472
Type: TC
Location: 500213 - 500470 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BrooksB_2017_SRR5405742_bin.5_k141_3688_470 vegan > omnivore 2.83805 0.00732
BrooksB_2017_SRR5405742_bin.5_k141_3688_470 vegetarian > omnivore 1.85337 0.00460
BrooksB_2017_SRR5405742_bin.5_k141_3688_472 vegetarian > omnivore 1.11186 0.00460

🧭 Explore Read Mapping of CGC

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