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Cluster: BrooksB_2017_SRR5405742_bin.5_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_120 120315 121031 - 9.B.20.2.2
pfam BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_121 121197 122534 + UPF0004 | Radical_SAM | TRAM_2
CAZyme BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_122 122574 124592 + GT41
pfam BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_123 124731 125846 + Semialdhyde_dh | Semialdhyde_dhC
peptidase BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_124 125901 126836 + S33.UNW
TC BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_125 127007 128461 + 2.A.47.3.1
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_120
Type: TC
Location: 120315 - 121031 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_121
Type: pfam
Location: 121197 - 122534 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_122
Type: CAZyme
Location: 122574 - 124592 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_123
Type: pfam
Location: 124731 - 125846 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_124
Type: peptidase
Location: 125901 - 126836 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_125
Type: TC
Location: 127007 - 128461 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BrooksB_2017_SRR5405742_bin.5_k141_436_120 vegetarian > omnivore 1.25805 0.00460

🧭 Explore Read Mapping of CGC

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