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Cluster: BrooksB_2017_SRR5405742_bin.5_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme BrooksB_2017_SRR5405742_bin.5_k141_3171 BrooksB_2017_SRR5405742_bin.5_k141_3171_99 90541 91569 + GT9
TC BrooksB_2017_SRR5405742_bin.5_k141_3171 BrooksB_2017_SRR5405742_bin.5_k141_3171_100 91519 92184 - 2.A.115.2.7
pfam BrooksB_2017_SRR5405742_bin.5_k141_3171 BrooksB_2017_SRR5405742_bin.5_k141_3171_101 92375 93916 + PFL-like | YjjI-like
TC BrooksB_2017_SRR5405742_bin.5_k141_3171 BrooksB_2017_SRR5405742_bin.5_k141_3171_102 93959 95824 - 2.A.16.2.2
TC BrooksB_2017_SRR5405742_bin.5_k141_3171 BrooksB_2017_SRR5405742_bin.5_k141_3171_103 95824 96129 - 9.B.21.2.1
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3171_99
Type: CAZyme
Location: 90541 - 91569 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3171_100
Type: TC
Location: 91519 - 92184 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3171_101
Type: pfam
Location: 92375 - 93916 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3171_102
Type: TC
Location: 93959 - 95824 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3171_103
Type: TC
Location: 95824 - 96129 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BrooksB_2017_SRR5405742_bin.5_k141_3171_99 vegan > omnivore 1.44325 0.00732
BrooksB_2017_SRR5405742_bin.5_k141_3171_99 vegetarian > omnivore 1.19415 0.00460
BrooksB_2017_SRR5405742_bin.5_k141_3171_100 vegan > omnivore 1.36191 0.00732
BrooksB_2017_SRR5405742_bin.5_k141_3171_100 vegetarian > omnivore 1.58426 0.00460

🧭 Explore Read Mapping of CGC

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