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Cluster: BrooksB_2017_SRR5405742_bin.5_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BrooksB_2017_SRR5405742_bin.5_k141_3139 BrooksB_2017_SRR5405742_bin.5_k141_3139_273 273447 275291 - 3.A.1.106.2
TF BrooksB_2017_SRR5405742_bin.5_k141_3139 BrooksB_2017_SRR5405742_bin.5_k141_3139_274 275368 276258 - HTH_AraC | HTH_AraC
pfam BrooksB_2017_SRR5405742_bin.5_k141_3139 BrooksB_2017_SRR5405742_bin.5_k141_3139_275 276362 276706 + CMD
CAZyme BrooksB_2017_SRR5405742_bin.5_k141_3139 BrooksB_2017_SRR5405742_bin.5_k141_3139_276 276779 277834 - GT9
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_273
Type: TC
Location: 273447 - 275291 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_274
Type: TF
Location: 275368 - 276258 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_275
Type: pfam
Location: 276362 - 276706 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_276
Type: CAZyme
Location: 276779 - 277834 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BrooksB_2017_SRR5405742_bin.5_k141_3139_273 vegetarian > vegan 1.02163 0.03878
BrooksB_2017_SRR5405742_bin.5_k141_3139_274 vegetarian > vegan 1.26678 0.02666
BrooksB_2017_SRR5405742_bin.5_k141_3139_275 vegan > omnivore 1.17501 0.00732
BrooksB_2017_SRR5405742_bin.5_k141_3139_275 vegetarian > omnivore 1.56230 0.00460
BrooksB_2017_SRR5405742_bin.5_k141_3139_276 vegetarian > omnivore 1.12884 0.00460
BrooksB_2017_SRR5405742_bin.5_k141_3139_276 vegetarian > vegan 1.33781 0.02666

🧭 Explore Read Mapping of CGC

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